View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15343_high_28 (Length: 243)

Name: NF15343_high_28
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15343_high_28
NF15343_high_28
[»] chr4 (10 HSPs)
chr4 (2-227)||(1326118-1326344)
chr4 (2-55)||(49748217-49748270)
chr4 (2-58)||(11653570-11653626)
chr4 (2-54)||(24539307-24539359)
chr4 (2-54)||(49357933-49357985)
chr4 (2-56)||(2527746-2527800)
chr4 (2-55)||(46420787-46420840)
chr4 (198-228)||(4875907-4875937)
chr4 (198-228)||(44185371-44185401)
chr4 (17-55)||(44783708-44783746)
[»] chr6 (2 HSPs)
chr6 (4-54)||(28078623-28078673)
chr6 (2-55)||(26898834-26898887)
[»] chr7 (8 HSPs)
chr7 (2-55)||(729051-729104)
chr7 (2-54)||(40462315-40462367)
chr7 (2-49)||(36159474-36159521)
chr7 (2-55)||(38029680-38029733)
chr7 (9-54)||(39703883-39703928)
chr7 (2-54)||(16718925-16718977)
chr7 (2-54)||(17693135-17693187)
chr7 (2-54)||(29322677-29322729)
[»] scaffold0210 (2 HSPs)
scaffold0210 (2-54)||(17783-17835)
scaffold0210 (2-54)||(25675-25727)
[»] chr5 (3 HSPs)
chr5 (2-54)||(42691629-42691681)
chr5 (4-59)||(19121278-19121333)
chr5 (2-54)||(5399123-5399175)
[»] chr3 (8 HSPs)
chr3 (2-54)||(49067080-49067132)
chr3 (2-63)||(40823646-40823706)
chr3 (1-54)||(51657287-51657340)
chr3 (2-54)||(13495986-13496038)
chr3 (18-57)||(30761264-30761303)
chr3 (4-55)||(49453230-49453281)
chr3 (20-55)||(53926345-53926380)
chr3 (2-52)||(48314614-48314664)
[»] chr8 (5 HSPs)
chr8 (7-61)||(27853769-27853823)
chr8 (2-57)||(37063944-37063999)
chr8 (2-55)||(34893023-34893076)
chr8 (2-42)||(16913160-16913200)
chr8 (6-58)||(41842816-41842868)
[»] chr2 (3 HSPs)
chr2 (2-55)||(12008478-12008531)
chr2 (2-51)||(25882661-25882710)
chr2 (2-54)||(37995412-37995464)
[»] scaffold0891 (1 HSPs)
scaffold0891 (2-54)||(1259-1311)
[»] chr1 (4 HSPs)
chr1 (2-54)||(50290378-50290430)
chr1 (2-52)||(39268247-39268297)
chr1 (2-55)||(8998845-8998898)
chr1 (18-55)||(23085899-23085936)
[»] scaffold0090 (1 HSPs)
scaffold0090 (2-54)||(12588-12640)
[»] scaffold1155 (1 HSPs)
scaffold1155 (5-54)||(68-117)
[»] scaffold0642 (1 HSPs)
scaffold0642 (5-54)||(189-238)
[»] scaffold0345 (1 HSPs)
scaffold0345 (5-54)||(10100-10149)
[»] scaffold0105 (1 HSPs)
scaffold0105 (5-54)||(28831-28880)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 1326118 - 1326344
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatttataatttatacacgttggtataataaaaaccctaaacgctag 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326118 tcaaatattaccttcgatatgacgcgtgcgatagcacgggtcgatggtctaattatttataatttatacacgttggtataataaaaaccctaaacgctag 1326217  T
Q  102 tagaccataagctcacaaccg-tttgtttgtcacaaaacaaagtagtttggattgcacgcttacagagaattggcttcagctttgacaaagaaatccatc 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326218 tagaccataagctcacaaccgttttgtttgtcacaaaacaaagtactttggattgcacgcttacagagaattggcttcagctttgacaaagaaatccatc 1326317  T
Q  201 catggctacaaaaagtgacaaggttag 227  Q
    |||||||||||||||||||||||||||    
T  1326318 catggctacaaaaagtgacaaggttag 1326344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 49748270 - 49748217
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  49748270 tcaaatattaccttccatatgacccgtgcgttagcacgggtcgatggtctagtt 49748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 11653626 - 11653570
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatt 58  Q
    ||||||||||||||| ||||||| |||||  ||||||||||||||| ||||||||||    
T  11653626 tcaaatattaccttccatatgacccgtgcattagcacgggtcgatgatctagttatt 11653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 24539307 - 24539359
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||| ||||||| |||||| |||||| |||||||||||||||    
T  24539307 tcaaatattaccttccatatgacccgtgcgttagcactggtcgatggtctagt 24539359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 49357933 - 49357985
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||| |||||||  ||||| ||||||||||||||||||||||    
T  49357933 tcaaatattaccttccatatgaccagtgcgttagcacgggtcgatggtctagt 49357985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 2527746 - 2527800
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtta 56  Q
    ||||||||||||||| |||||||  ||||| |||||||| |||||||||||||||    
T  2527746 tcaaatattaccttccatatgacatgtgcgttagcacggatcgatggtctagtta 2527800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 46420787 - 46420840
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    ||||||||||||||| |||||||| ||||  |||||||| ||||||||||||||    
T  46420787 tcaaatattaccttccatatgacttgtgcattagcacggatcgatggtctagtt 46420840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 4875907 - 4875937
Alignment:
Q  198 atccatggctacaaaaagtgacaaggttagt 228  Q
    |||||||||||||||||||||||||||||||    
T  4875907 atccatggctacaaaaagtgacaaggttagt 4875937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 44185371 - 44185401
Alignment:
Q  198 atccatggctacaaaaagtgacaaggttagt 228  Q
    |||||||||||||||||||||||||||||||    
T  44185371 atccatggctacaaaaagtgacaaggttagt 44185401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 44783746 - 44783708
Alignment:
Q  17 gatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  44783746 gataagacccgtgcgatagcacgggtcgatggtctagtt 44783708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 28078673 - 28078623
Alignment:
Q  4 aaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  28078673 aaatattaccttcgatatgacccgtgcgatatcacgggtcgatggtctagt 28078623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 26898887 - 26898834
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    ||||||||||||||| ||||||| |||| | |||||||||||||||||||||||    
T  26898887 tcaaatattaccttccatatgacccgtgtggtagcacgggtcgatggtctagtt 26898834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 729051 - 729104
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  729051 tcaaatattaccttcgatatgacccgtacgttagcacgggtcgatggtctagtt 729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 40462367 - 40462315
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||  ||||||| |||||| ||||||||||||||||||||||    
T  40462367 tcaaatattacctttcatatgacccgtgcgttagcacgggtcgatggtctagt 40462315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 36159474 - 36159521
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggt 49  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||    
T  36159474 tcaaatattacctttcatatgactcgtgcgttagcacgggtcgatggt 36159521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 38029680 - 38029733
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    ||||||||||||||| ||||||  |||| | |||||||||||||||||||||||    
T  38029680 tcaaatattaccttcaatatgatccgtgtgttagcacgggtcgatggtctagtt 38029733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 39703928 - 39703883
Alignment:
Q  9 ttaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||||    
T  39703928 ttaccttcgaaatgacccgtgcgttagcacgggtcgatggtctagt 39703883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 16718925 - 16718977
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||| |||| || ||||| |  ||||||||||||||||||||    
T  16718925 tcaaatattaccttccatataacccgtgctaatgcacgggtcgatggtctagt 16718977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 17693135 - 17693187
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||| |||| || ||||| |  ||||||||||||||||||||    
T  17693135 tcaaatattaccttccatataacccgtgctaatgcacgggtcgatggtctagt 17693187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 29322677 - 29322729
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||| |||||||  ||||| |||||||||| |||||| ||||    
T  29322677 tcaaatattaccttccatatgaccggtgcgttagcacgggtagatggtttagt 29322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 17783 - 17835
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  17783 tcaaatattaccttcgaaatgactcgtgcattagcacgggtcgatggtctagt 17835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 25675 - 25727
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  25675 tcaaatattaccttcgaaatgactcgtgcattagcacgggtcgatggtctagt 25727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 42691681 - 42691629
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  42691681 tcaaatattaccttccatatgactcgtgcgttagcacaggtcgatggtctagt 42691629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 19121333 - 19121278
Alignment:
Q  4 aaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttattt 59  Q
    ||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||    
T  19121333 aaatattaccttccatatgaccagtgcgttagcacgggtcgatggtctagttattt 19121278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 5399123 - 5399175
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    |||||||||||||||||||||||  ||||| ||| | || |||||||||||||    
T  5399123 tcaaatattaccttcgatatgacgtgtgcgttagtatggatcgatggtctagt 5399175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 49067132 - 49067080
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  49067132 tcaaatattaccttccatatgacccgtgcgttagcacgggtcgatggtctagt 49067080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 40823646 - 40823706
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatttataa 63  Q
    ||||||||||||||| ||||||| |||||  ||||||||||||||||||||| |||||||||    
T  40823646 tcaaatattaccttccatatgacccgtgccttagcacgggtcgatggtctag-tatttataa 40823706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51657287 - 51657340
Alignment:
Q  1 ctcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||||||||    
T  51657287 ctcaaatattaccttccatatgacatgtgcgttagcacgggtcgatggtctagt 51657340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 13495986 - 13496038
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||||||||||| | | || ||||||||||||||||||||||    
T  13495986 tcaaatattaccttcgatatgacccttacgttagcacgggtcgatggtctagt 13496038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 30761303 - 30761264
Alignment:
Q  18 atatgactcgtgcgatagcacgggtcgatggtctagttat 57  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  30761303 atatgacccgtgcgatagcacgggtggatggtctagttat 30761264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 49453281 - 49453230
Alignment:
Q  4 aaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    ||||||||||||| ||||| | || |||||||||| ||||||||||||||||    
T  49453281 aaatattaccttcaatatgtcccgcgcgatagcacaggtcgatggtctagtt 49453230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 53926380 - 53926345
Alignment:
Q  20 atgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    |||||||||||| |||||||||||||||||||||||    
T  53926380 atgactcgtgcgttagcacgggtcgatggtctagtt 53926345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 48314614 - 48314664
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtcta 52  Q
    ||||||||||||||| ||||||| ||| || ||||||||||||||| ||||    
T  48314614 tcaaatattaccttccatatgacccgtacgttagcacgggtcgatgatcta 48314664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 27853823 - 27853769
Alignment:
Q  7 tattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatttat 61  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||||||| |||||    
T  27853823 tattaccttcaatatgacccgtgcgttagcacgggtcgatggtctagttgtttat 27853769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 37063944 - 37063999
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttat 57  Q
    ||||||||||| ||||||||||| ||||| |  ||||||||| |||||||||||||    
T  37063944 tcaaatattactttcgatatgacccgtgctaacgcacgggtcaatggtctagttat 37063999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 34893076 - 34893023
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    |||||||||||| ||  ||||||| ||||| ||||||||||| |||||||||||    
T  34893076 tcaaatattaccctccttatgacttgtgcgttagcacgggtcaatggtctagtt 34893023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 16913200 - 16913160
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggt 42  Q
    ||||||||||||||| ||||||| |||||| ||||||||||    
T  16913200 tcaaatattaccttccatatgacccgtgcgttagcacgggt 16913160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 41842868 - 41842816
Alignment:
Q  6 atattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagttatt 58  Q
    ||||||| ||| |||||||  ||||  ||||||||||||||||||||||||||    
T  41842868 atattactttccatatgacctgtgcattagcacgggtcgatggtctagttatt 41842816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 12008531 - 12008478
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    ||||||||||||||||||||||| |||| | ||||||||||| |||||||||||    
T  12008531 tcaaatattaccttcgatatgacccgtgtgttagcacgggtcaatggtctagtt 12008478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 25882710 - 25882661
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtct 51  Q
    |||||||||||||||||||||||  ||||| |||||||||| ||||||||    
T  25882710 tcaaatattaccttcgatatgacatgtgcgttagcacgggttgatggtct 25882661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 37995412 - 37995464
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||| ||||||  |||| | ||||||||||||||||||||||    
T  37995412 tcaaatattaccttccatatgatccgtgtgttagcacgggtcgatggtctagt 37995464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 1311 - 1259
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||    
T  1311 tcaaatattaccttccatatgacccgtgcgttagcacggatcgatggtctagt 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 50290378 - 50290430
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||    
T  50290378 tcaaatattacgttccatatgacccgtgcgttagcacgggtcgatggtctagt 50290430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 39268297 - 39268247
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtcta 52  Q
    ||||||||||| ||||||||||| |||||| |||| |||||||||||||||    
T  39268297 tcaaatattacattcgatatgacccgtgcgttagcgcgggtcgatggtcta 39268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 8998845 - 8998898
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    ||||||||||| |||||||||||  ||||| ||||||||||| |||||||||||    
T  8998845 tcaaatattacattcgatatgacctgtgcgttagcacgggtcaatggtctagtt 8998898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 23085936 - 23085899
Alignment:
Q  18 atatgactcgtgcgatagcacgggtcgatggtctagtt 55  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  23085936 atatgacccgtgcgttagcacgggtcgatggtctagtt 23085899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 12640 - 12588
Alignment:
Q  2 tcaaatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||| ||| ||||||| |||||  ||||||||||||||||||||||    
T  12640 tcaaatattacattccatatgacccgtgcattagcacgggtcgatggtctagt 12588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 117 - 68
Alignment:
Q  5 aatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  117 aatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 68  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 189 - 238
Alignment:
Q  5 aatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  189 aatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 10100 - 10149
Alignment:
Q  5 aatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  10100 aatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 10149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 28880 - 28831
Alignment:
Q  5 aatattaccttcgatatgactcgtgcgatagcacgggtcgatggtctagt 54  Q
    ||||||||||||||||| || |||||| |||||  |||||||||||||||    
T  28880 aatattaccttcgatataacccgtgcgttagcagcggtcgatggtctagt 28831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University