View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_high_31 (Length: 229)
Name: NF15343_high_31
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31132077 - 31132288
Alignment:
| Q |
1 |
gcactcacgtggttcttttggttaatctctaagcatagtcatgtagagaatgagattcttaaagagattactagaaaatcaatgatagttagttacgatg |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31132077 |
gcactcacgtggttctttttgttaatctctaagcatagtcatgtagagaatgagattcttaaagagattactagaaaatcaatgatagttagtaacgatg |
31132176 |
T |
|
| Q |
101 |
aggtgaaggatatggtttacactcatgcatcgttatgcgagagtatgagattgtaccctccagttccagtggatgctaaggaagcagcctacgatgatgt |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31132177 |
aggtgaagaatatggtttacactcatgcatcgttatgcgagagtatgagaatggaccctccagtttcagtggatgctaaggaagcagcctacgatgatgt |
31132276 |
T |
|
| Q |
201 |
tttgccagatgg |
212 |
Q |
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|||||||||||| |
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| T |
31132277 |
tttgccagatgg |
31132288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31078051 - 31078262
Alignment:
| Q |
1 |
gcactcacgtggttcttttggttaatctctaagcatagtcatgtagagaatgagattcttaaagagattactagaaaatcaatgatagttagttacgatg |
100 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||| |||||||||||||||| |
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| T |
31078051 |
gcactcacgtggttcttttggctactctctaagcatagtcatgtggagaatgaaattctcaaagagattaccggaaaatcagaaatagttagttacgatg |
31078150 |
T |
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| Q |
101 |
aggtgaaggatatggtttacactcatgcatcgttatgcgagagtatgagattgtaccctccagttccagtggatgctaaggaagcagcctacgatgatgt |
200 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||| | || |||||||||||||||||| |||| |||||||| ||| ||||||| |
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| T |
31078151 |
aggtgaaggatatggtttatactcatgcgtcgttatgcgagagtatgagactttatcctccagttccagtggatactaaagaagcagcgtacaatgatgt |
31078250 |
T |
|
| Q |
201 |
tttgccagatgg |
212 |
Q |
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|||||||||||| |
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| T |
31078251 |
tttgccagatgg |
31078262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 31127369 - 31127553
Alignment:
| Q |
1 |
gcactcacgtggttcttttggttaatctctaagcatagtcatgtagagaatgagattcttaaagagattactagaaaatcaatgatagttagttacgatg |
100 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| || || ||| ||||||| | |||| |||| ||| |
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| T |
31127369 |
gcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaagttatgggaaaatcggaaacggttaattacaatg |
31127468 |
T |
|
| Q |
101 |
aggtgaaggatatggtttacactcatgcatcgttatgcgagagtatgagattgtaccctccagttccagtggatgctaaggaagc |
185 |
Q |
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|||||||||||||||||||||||||||| | ||||| |||||||||||| |||| ||||| ||||| ||||||| ||||||||| |
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| T |
31127469 |
aggtgaaggatatggtttacactcatgcggctttatgtgagagtatgagactgtatcctccggttcccgtggatggtaaggaagc |
31127553 |
T |
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