View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_high_5 (Length: 533)
Name: NF15343_high_5
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 522
Target Start/End: Complemental strand, 52609570 - 52609062
Alignment:
| Q |
14 |
attgagacatcctcattctaatcacattgtactcatatgggtaaagacaaaattgggac------accaaacgtgatcatcccttggagcacaagcccaa |
107 |
Q |
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| T |
52609570 |
attgagacctcctcattctaatcacattgtactcatatgggtaaacacaaaattgggactctttcaccaaacgtgatcatcacttggagcacaagcccaa |
52609471 |
T |
|
| Q |
108 |
caaaaataactgcctgaagttaatcgtcgatgttagagcactagaatctttaagtcttcgcctcaaagaacaagacaatgacttgtgggctaaggtaaaa |
207 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
52609470 |
caaaaataaccgcctgaagttaatcgtcgatgttagagcactagaatctttaagtcttcgcctcaaagaacaagacaatgacttgggggctagggtaaaa |
52609371 |
T |
|
| Q |
208 |
tgaggtgcggaaatgcagtcgtggatctcttatatatgtaaagagccgtgaaacactaaataaggctctcagaggcaatagtgtgcagccgtctaaaagc |
307 |
Q |
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| T |
52609370 |
tgaggcgcgaaaatgcagtcgtggatctcttatatatgtaaagagccgtgaaacactaaataaggctctcagaggcaatagtgtgcagccgtctaaaagc |
52609271 |
T |
|
| Q |
308 |
ccgtactaatgcaacgaacgaactgaaaattaatctaaaaatagaataaaccactgcaaaatcatgtgcacattctcatttcgagaaaagccttaaaata |
407 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52609270 |
acgtactaatgcaacgaacgaactgaa----aatctaaaaatagaataatccactgcaaaatcatgtgcacattctcatttcgagaaaagccttaaaaca |
52609175 |
T |
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| Q |
408 |
ccttgagatatcattgactttgagtattggaatgtctttgttggtacatcccccacacccatgaagaaccgctgtcgtcaacaaccacatcaacttccta |
507 |
Q |
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| T |
52609174 |
ccttgagatatcattgactttgagtattggaatgtctttgttggtacat--cccacacccatgaagaaccgctgtcgtcaacaaccacatcaacttccta |
52609077 |
T |
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| Q |
508 |
gcatccacttcggcc |
522 |
Q |
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| T |
52609076 |
gcacccacttcggcc |
52609062 |
T |
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