View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15343_high_6 (Length: 531)
Name: NF15343_high_6
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 10922263 - 10921760
Alignment:
| Q |
19 |
agtatacatagaaaatcgactatagttgttaaaccaattgaatctgtggttagacttgattttcacaaca-----ataaatacgatatgtatctacaaat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10922263 |
agtatacatagaaaatcgactatagttgttaaaccaattgaatctgtggttcgacttgattttcacaacactgcaataaatacgatatgtatctacaaat |
10922164 |
T |
|
| Q |
114 |
tttgcctccaataggcggtgaggttgaattttgataacatgaaataagcactaaaacaatcttaaaagaacgtaaactaagtagagatatattatagaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
10922163 |
tttgcctccaataggcggtgaggttgaagtttgataacatgaaataagcactaaaacaatcttaaaaaaa-gtaaactaagtagagatatattatagaaa |
10922065 |
T |
|
| Q |
214 |
ctaaaccaatattggaaattacaagcgttgttcatattattggcaaattagacctgaaaaa-ttattttcccatatatttcttgtcaaataaaccctgca |
312 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10922064 |
ctaaaccaatattggaaattataagcgttgttcatattattggcaaattagacctgaaaaaattattttcccatatatttattgtcaaataaaccctgca |
10921965 |
T |
|
| Q |
313 |
ttatattaggatgacaactcaaaagcacaaacaatacatgttatactcaaaagttgctgacctcaatgtcagttaacaagatataaacctttcacattag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10921964 |
ttatattaggatgacaactcaaaagcacaaacaatacatgttgtactcaaaagttgctgacctcaatgtcagttaacaagatataaacctttcacattag |
10921865 |
T |
|
| Q |
413 |
ctaatacattgagttataaatgtttagaagatagtacaagctgcaaacaaatgcatgtgtctaacaatatagaagatacacatcaataagatttttaaag |
512 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10921864 |
caaatacattgagttataaatgtttagaagatagtacaagctgcaaacaaatgcatgtgtc--ccaatatagaagatacgcatcaataagatttttaaag |
10921767 |
T |
|
| Q |
513 |
atatatt |
519 |
Q |
| |
|
||||||| |
|
|
| T |
10921766 |
atatatt |
10921760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 10950341 - 10950297
Alignment:
| Q |
322 |
gatgacaactcaaaagcacaaacaatacatgttatactcaaaagt |
366 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||| |||||||| |
|
|
| T |
10950341 |
gatgacaactcaaaggcaccaataatacatgttatattcaaaagt |
10950297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 10950504 - 10950452
Alignment:
| Q |
195 |
tagagatatattatagaaactaaaccaatattggaaattacaagcgttgttca |
247 |
Q |
| |
|
||||||||||| ||||||||||||| || ||| ||||| ||||| |||||||| |
|
|
| T |
10950504 |
tagagatatataatagaaactaaactaagattcgaaataacaagtgttgttca |
10950452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 10951130 - 10951102
Alignment:
| Q |
87 |
caataaatacgatatgtatctacaaattt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10951130 |
caataaatacgatatgtatctacaaattt |
10951102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University