View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_high_8 (Length: 447)
Name: NF15343_high_8
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_high_8 |
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| [»] scaffold0542 (2 HSPs) |
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Alignment Details
Target: scaffold0542 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 6769 - 7020
Alignment:
| Q |
12 |
gaagaatatgaccttcataatactagttcaaccaatataggtaagtaaagtcacaaccacaatttgaactcgagctttctcgaataatatatctttagct |
111 |
Q |
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| T |
6769 |
gaagaatgtgaccttcataatactagttcaaccaatataggtaagtaaagtcacaaccacgattcgaactcgagctctttcggataatatttctttagct |
6868 |
T |
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| Q |
112 |
atatttgattaaccacttaagtcaaatcacttagaaattaattactatagtgattaatttgcataactaaatatattaacatcctcaaacttcattaaac |
211 |
Q |
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| T |
6869 |
atatttcattaatcacctaagtcaaatcacttaaaaattaattactatagtgattaatttgcataactaaatatattaacatcctcaaacttcattaaac |
6968 |
T |
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| Q |
212 |
aggaaccaacaaacatggttagtagcaaagtaagtcgccatcccttcattat |
263 |
Q |
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| T |
6969 |
aagaaccaacaaacatggttagtagcaaagtaagtcgccatcccttcattat |
7020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0542; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 332 - 429
Target Start/End: Original strand, 7092 - 7189
Alignment:
| Q |
332 |
tcatcttaagtgatcatattcaagtgctcacaaaaccactagaatatatgataaaggaagcgctctctatactaaatcaaaattttgttgcttacaac |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7092 |
tcatcttaagtgatcatattcaagtgctcacaaaaccactagaatatatgataaaggaagcgctctctatactaaatcaaaattttgttgcttacaac |
7189 |
T |
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