View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15343_low_1 (Length: 957)
Name: NF15343_low_1
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 376 - 941
Target Start/End: Original strand, 49876561 - 49877144
Alignment:
| Q |
376 |
gttcttctaaaaatgatgcaagtgcaagttcctgtgactcacaaaatcaaccatctcttcaatttccttcagaatcatccttcttcaatagctctcaatc |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49876561 |
gttcttctaaaaatgatgcaagtgcaagttcctgtgactcacaaaatcaaccatctcttcaatttccttcagaatcatccttcttcaatagctctcaatc |
49876660 |
T |
|
| Q |
476 |
tctgcaaatatcccgctcttttcctcgctctactcgccacctttcgcaccattttcatcattaaattccccnnnnnnnctccttctcttcctcctctcct |
575 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| | |
|
|
| T |
49876661 |
tctgcaaatattccgctcttttcctcgctctactcgccacctttcacaccattttcatcatcaaattccccaaaaaaactccttctcttcctcctctcat |
49876760 |
T |
|
| Q |
576 |
tgctcaagatgatttcagcgacagtgaagatgaaacctgctcgttgtcgtccatgtcatcggaacccgaagacgatgaagaaga---------------- |
659 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
49876761 |
tgctgaagatgatttcggcgacagtgaagatgaaacctgctcgttgtcatccatgtcatcggaacccgaagacaatgaagaagaagaagaagaagaagat |
49876860 |
T |
|
| Q |
660 |
--tgaaaacagatcgggtgaatatttccgattaaaaggctccggaaacggtgacggatttctacgcagttgtcgtcgtagtattaccgatatattttcgt |
757 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49876861 |
gatgaaaacagatcgggtgaatatttccgattaaaaggctccggaaacggtgacggatttctacgcagttgtcgtcgtagtattaccgatatattttcgt |
49876960 |
T |
|
| Q |
758 |
tatcggaaatcgcgaacagcaaaagcgttgtgaagctttgggatacaatagggtttggattaggatttggatttgacgattttgattcctctgtcgtgtc |
857 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49876961 |
tatcggaaatcgcgaacagcaaaagcgttgtgaagctttgggatacaatagggtttggattaggatttggatttgacgattttgattcctctgtcgtgtc |
49877060 |
T |
|
| Q |
858 |
gttatacggcggtgccgacgagaaacaaagcacgttatcgtcggcgaggatggtttccgccggagaaaacgcgtcggagaattc |
941 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49877061 |
gttatacggcggtgccgacgagaaacaaagcacgttatcgtcggcgaggatggtttccgccggagaaaacgcatcggagaattc |
49877144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 5 - 313
Target Start/End: Original strand, 49876170 - 49876479
Alignment:
| Q |
5 |
ggagcacagaaggaaagttcaaaatttgaacaaatgaaaatctctactaatctaataatgtttgggacttccgtcatcattcatatccacatccatgtat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49876170 |
ggagcacagaaggaaagttcaaaatttgaacaaatgaaaatctctactaatctaataatgtttgggacttccgtcatcattcatatccacatccatgtat |
49876269 |
T |
|
| Q |
105 |
gttgatttatacaaactaaatacataatccaacaacttgccaacaaggaagttataagttatcattaaccaacacatttccttacgtggaaactaatatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49876270 |
gttgatttatacaaactaaatacataatccaacaacttgccaacaaggaagttataagttatcattaaccaacacatttccttacgtggaaactaatatt |
49876369 |
T |
|
| Q |
205 |
ctt-caccatatatagtttattatgttagttatcgctaactacataatccaacaaattgccagcaagtaagttaagttatcattctaaaaaacaagagta |
303 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49876370 |
cttccaccatatatagtttattatgttagttatcgctaactacataatccaacaaattgccagcaagtaagttaagttatcattctaaaaaacaagagta |
49876469 |
T |
|
| Q |
304 |
agttaagtag |
313 |
Q |
| |
|
|||||||||| |
|
|
| T |
49876470 |
agttaagtag |
49876479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University