View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_low_11 (Length: 415)
Name: NF15343_low_11
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Original strand, 455630 - 456021
Alignment:
| Q |
7 |
gtgagatgaatttgttcaaactttattaatattgttatttgtttcattatctgactatcaacagtgttactgatattttcctttccttctttattttata |
106 |
Q |
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| T |
455630 |
gtgaaatgaatttgttcaaactttattaatattgttatttgtttcattatttgactatcaacagtgttactgatattttcctttccttctttattttata |
455729 |
T |
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| Q |
107 |
cttctatagagaattcgaaaacgaattgtctaatgttaattcctagtttcatatgaaagatctattaacttacttgacaagtaattctaagatattggat |
206 |
Q |
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| T |
455730 |
cttctatagagaattcgaaaacgaattgtctaatgttaattcctagtttcatatgaaagatctattaacttacttgacaagtaattctaagatattggat |
455829 |
T |
|
| Q |
207 |
aattgatctcatttttcatttatgagctatattttggtgattaaattatcttgtacttctccactatttctcattctatttttctgcaaagttacgactt |
306 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
455830 |
aattgatctc-tttttcatttatgagctatattttggtgattaaattatcttgtacttctccactatttctcattctatttttctgcgaagttacgactt |
455928 |
T |
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| Q |
307 |
gggatgcttttaaggggataattgaaaagtcataactaataagtaattcttaattggttctcaaattctatcttattcagattttttacttag |
399 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
455929 |
gggatgcttttaaggggataattgaacagtcataactaataagtaattcttaattggttctcaagttctttcttattcagattttttacttag |
456021 |
T |
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