View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_low_12 (Length: 402)
Name: NF15343_low_12
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 54496335 - 54496710
Alignment:
| Q |
18 |
ctctgctcacgaattcacagtcggtgataccattcgtaagccatatatcattcctcttaattaattacttcttaactacatataaaaaatgatgaatttg |
117 |
Q |
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| T |
54496335 |
ctctgctcacgaattcacagtcggtgataccatccgtaagccatatagcattcctcttaattaattacttcttaactacatataaaaaatgatgaatttg |
54496434 |
T |
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| Q |
118 |
tttctcgtatttatgcatgtatacatgcagtgtttgagtacgataacgaaacagaatcagtgcacgaagtgaatgagcatgattatataatgtgtcatac |
217 |
Q |
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| T |
54496435 |
tttctcgtatttatgcatgtatacatgcagtgtttgagtacgataacgaaacagaatcagtgcacgaagtgaatgagcatgattatataatgtgtcatac |
54496534 |
T |
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| Q |
218 |
aaatggagaacatgtggagcaccacgacggcaacactaaggttgtgcttgataaaataggagtatatcatttcataagtggaacaaagcgtcattgcaag |
317 |
Q |
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| T |
54496535 |
aaatggagaacatgtggagcaccacgacggcaacactaaggttgtgcttgataaaataggagtatatcatttcataagtggaacaaagcgtcattgcaag |
54496634 |
T |
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| Q |
318 |
atgggattaaagctggctgtcgttgtccaaaacaagcatgacctagttctcccacctctaattacaatgcctatgc |
393 |
Q |
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| T |
54496635 |
atgggattaaagctggctgtcgttgtccaaaacaagcatgacctagttctcccacctctaattacaatgcctatgc |
54496710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 54504639 - 54504760
Alignment:
| Q |
222 |
ggagaacatgtggagcaccacgacggcaacactaaggttgtgcttgataaaataggagtatatcatttcataagtggaacaaagcgtcattgcaagatgg |
321 |
Q |
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| T |
54504639 |
ggagagcatgtagaccactacgacggcaatacaatggtggtgcttaagaaaacaggaatacatcatttcataagtggaaaaaagcgtcattgcaggttgg |
54504738 |
T |
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| Q |
322 |
gattaaagctggctgtcgttgt |
343 |
Q |
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| T |
54504739 |
gtttaaagctagctgttgttgt |
54504760 |
T |
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