View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15343_low_14 (Length: 394)

Name: NF15343_low_14
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15343_low_14
NF15343_low_14
[»] chr5 (5 HSPs)
chr5 (110-252)||(27578873-27579015)
chr5 (273-382)||(27579008-27579117)
chr5 (303-352)||(5112440-5112489)
chr5 (303-353)||(12910349-12910399)
chr5 (303-363)||(22616493-22616553)
[»] chr4 (4 HSPs)
chr4 (128-252)||(2570344-2570466)
chr4 (273-382)||(2570459-2570567)
chr4 (20-142)||(2570009-2570140)
chr4 (303-354)||(2704511-2704562)
[»] chr8 (2 HSPs)
chr8 (303-373)||(4108891-4108961)
chr8 (305-373)||(23176742-23176811)
[»] chr2 (1 HSPs)
chr2 (296-351)||(43446463-43446518)
[»] chr1 (2 HSPs)
chr1 (303-353)||(10182139-10182189)
chr1 (212-250)||(23994721-23994759)
[»] chr3 (1 HSPs)
chr3 (304-373)||(49359607-49359676)
[»] chr7 (2 HSPs)
chr7 (304-352)||(31520861-31520909)
chr7 (304-352)||(37346997-37347045)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 27578873 - 27579015
Alignment:
Q  110 gttagcatatctagtttcgaaaatcaaaaccaagtcccactgttataagagtttaattaatatactttatctatgcattattattttataaatgtattga 209  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  27578873 gttagcatatctagtttcgaaaatcagaaccaagtcccactattataagagtttaattaatatattttatcaatgcattattattttataaatgtattga 27578972  T
Q  210 attattttgtcacgttaattaatgaatataacaagttttttac 252  Q
    ||| |||||||||||||||||||||||||||||| ||||||||    
T  27578973 attgttttgtcacgttaattaatgaatataacaacttttttac 27579015  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 273 - 382
Target Start/End: Original strand, 27579008 - 27579117
Alignment:
Q  273 ttttttacatagtatactaagtaaatttttaggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatatt 372  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27579008 ttttttacatagtatactaagtaattttttaggaaaattttatggtgaaatcgtgaaaacgacttttttggtgaagttaaattgctaatcaatgaatatt 27579107  T
Q  373 ttcatctcac 382  Q
    ||||| ||||    
T  27579108 ttcatgtcac 27579117  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 5112489 - 5112440
Alignment:
Q  303 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaa 352  Q
    ||||||||||||||||||| || |||||| |||||||| |||||||||||    
T  5112489 aggaaaattttatggtgaagtcatgaaaatgacttttttggtgaagttaa 5112440  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 12910349 - 12910399
Alignment:
Q  303 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaa 353  Q
    ||||||||| ||||||||| || |||||| |||||||| ||||||||||||    
T  12910349 aggaaaattctatggtgaagtcatgaaaatgacttttttggtgaagttaaa 12910399  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 22616493 - 22616553
Alignment:
Q  303 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatca 363  Q
    ||||||||| ||||||||| || |||||| |||||||  ||||||||||||| || |||||    
T  22616493 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagttaaatggccaatca 22616553  T

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Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 128 - 252
Target Start/End: Original strand, 2570344 - 2570466
Alignment:
Q  128 gaaaatcaaaaccaagtcccactgttataagagtttaattaatatactttatctatgcattattattttataaatgtattgaattattttgtcacgttaa 227  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||  ||    
T  2570344 gaaaatcagaaccaagtcccactattataagagtttaattaatatactttatcaatgcattattattttataaatgtattgaattgttttgtaacg--aa 2570441  T
Q  228 ttaatgaatataacaagttttttac 252  Q
    ||||| |||||||||| ||||||||    
T  2570442 ttaataaatataacaacttttttac 2570466  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 273 - 382
Target Start/End: Original strand, 2570459 - 2570567
Alignment:
Q  273 ttttttacatagtatactaagtaaatttttaggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatatt 372  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||    
T  2570459 ttttttacatagtat-ctaagtaaatttttaggaaaattttatggtgaaatcgtgaaaacgacttttttggtgaaattaaattgttaatcaatgaatatt 2570557  T
Q  373 ttcatctcac 382  Q
    ||||| ||||    
T  2570558 ttcatgtcac 2570567  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 2570009 - 2570140
Alignment:
Q  20 agaggttgattcaagaatgatatatatgaataggttgcatctgtctcattatttgaagaacaa---------agagaattctcattgattgaaggaattg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |           ||||||||||||| ||||||||||||    
T  2570009 agaggttgattcaagaatgatatatatgaataggttgcatctgtctcattatttgaagaatgatatatatttgaagaattctcattgtttgaaggaattg 2570108  T
Q  111 ttagcatatctagtttcgaaaatcaaaaccaa 142  Q
    ||||||||||||||||||||||||| ||||||    
T  2570109 ttagcatatctagtttcgaaaatcagaaccaa 2570140  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 2704511 - 2704562
Alignment:
Q  303 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaat 354  Q
    ||||||||||||||||||| || |||||| |||||||  |||||||||||||    
T  2704511 aggaaaattttatggtgaagtcatgaaaatgacttttctggtgaagttaaat 2704562  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 4108961 - 4108891
Alignment:
Q  303 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatattt 373  Q
    ||||||||||||||||||| || |||||| |||||||| ||| |||||||||  | ||||| |||||||||    
T  4108961 aggaaaattttatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatattt 4108891  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 23176811 - 23176742
Alignment:
Q  305 gaaaattt-tatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatattt 373  Q
    |||||||| ||||||||| || |||||| |||||||| |||||||||||||  | ||||| |||||||||    
T  23176811 gaaaatttctatggtgaagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatattt 23176742  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 43446518 - 43446463
Alignment:
Q  296 aatttttaggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagtta 351  Q
    |||||||||||||||| ||||||||| || ||| || |||||||| ||||||||||    
T  43446518 aatttttaggaaaattctatggtgaagtcatgagaatgactttttcggtgaagtta 43446463  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 10182189 - 10182139
Alignment:
Q  303 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaa 353  Q
    ||||||||| ||||||||| || |||||| |||||||| ||||||||||||    
T  10182189 aggaaaattctatggtgaagtcatgaaaatgacttttttggtgaagttaaa 10182139  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 23994759 - 23994721
Alignment:
Q  212 tattttgtcacgttaattaatgaatataacaagtttttt 250  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  23994759 tattttgtcacgtcaattaatgaatataacaagtatttt 23994721  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 49359676 - 49359607
Alignment:
Q  304 ggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatattt 373  Q
    |||||||| ||||||||| || |||||| ||||||||  |||||||||||| || ||||| |||| ||||    
T  49359676 ggaaaattctatggtgaagtcatgaaaatgactttttttgtgaagttaaatggccaatcattgaacattt 49359607  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 31520909 - 31520861
Alignment:
Q  304 ggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaa 352  Q
    ||||||||||||| |||| || |||||| |||||||| |||||||||||    
T  31520909 ggaaaattttatgatgaagtcatgaaaatgacttttttggtgaagttaa 31520861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 37346997 - 37347045
Alignment:
Q  304 ggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaa 352  Q
    |||||||||||||||||| || |||||| || ||||| |||||||||||    
T  37346997 ggaaaattttatggtgaagtcatgaaaatgatttttttggtgaagttaa 37347045  T

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