View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15343_low_17 (Length: 322)

Name: NF15343_low_17
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15343_low_17
NF15343_low_17
[»] chr2 (1 HSPs)
chr2 (13-302)||(45098570-45098859)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 45098570 - 45098859
Alignment:
Q  13 aatattatgagaggaataaaagtaccaagtccataatctctattagaaaatttcaatctcatccacttaatgataatttggattccaatcatgtgctccc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45098570 aatattatgagaggaataaaagtaccaagtccataatctctattagaaaatttcaatctcatccacttaatgataatttggattccaatcatgtgctccc 45098669  T
Q  113 tgaagtagaggccattggcatagaatcagagaaggaattattacttattaaaatcaactgtgagaaacgtgaaggcattttgttcaaactattgtctatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45098670 tgaagtagaggccattggcatagaatcagagaaggaattattacttattaaaatcaactgtgagaaacgtgaaggcattttgttcaaactattgtctatg 45098769  T
Q  213 ctggaaaatatgcacctctatgtttccaccagtagtgtgcttccatttgggaaaaataccctcaacattaccatcattgctaaggtaatg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45098770 ctggaaaatatgcacctctatgtttccaccagtagtgtgcttccatttgggaaaaataccctcaacattaccatcattgctaaggtaatg 45098859  T

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