View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_low_22 (Length: 266)
Name: NF15343_low_22
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 34042608 - 34042856
Alignment:
| Q |
1 |
aacccctcatgacattctttttcgcaatcttgctgtttctataatcgccaaggtcagtcatcatttcgagcttcgttttcttgaatttcatcatcgattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042608 |
aacccctcatgacattctttttcgcaatcttgctgtttctataatcgccaaggtcagtcatcatttcgagcttcgttttcttgaatttcatcatcgattc |
34042707 |
T |
|
| Q |
101 |
attgagaaaattcatgtcatttgcatgctcgattcatgatttgaagctttgttttcgttgattttgctgagttgaatctgttccgttgtgttagattctt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042708 |
attgagaaaattcatgccatttgcatgctcgattcatgatttgaagctttgttttcgttgattttgctgagttgaatctgttccgttgtgttagattctt |
34042807 |
T |
|
| Q |
201 |
ctcccgctttgtgtttcatgagaaatttcttttattctgttattaattt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042808 |
ctcccgctttgtgtttcatgagaaatttcttttattctgttattaattt |
34042856 |
T |
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Back To:
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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 4046531 - 4046456
Alignment:
| Q |
10 |
tgacattctttttcgcaatcttgctgtttctataatcgccaaggtcagtcatcatttcgagcttcgttttcttgaa |
85 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||| |
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| T |
4046531 |
tgacattctttttcgcaatcttgctgtttctgtaatcgtcaaggtcagtcatcattttgagctttgttttcttgaa |
4046456 |
T |
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