View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_low_25 (Length: 259)
Name: NF15343_low_25
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 4246158 - 4245988
Alignment:
| Q |
16 |
agttagtactactcacctgcttctccttgttcttggaaatagaaactttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctttgag |
115 |
Q |
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| T |
4246158 |
agttagtactactcacatgcttctccttgttcttggaaatagaaactttagtagagatatgatcgagaaggtcgtcagctatatagggagcatctttgag |
4246059 |
T |
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| Q |
116 |
gtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagcttcaa |
186 |
Q |
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|||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4246058 |
gtcatcaaactagttgttaacagcagagtctttgagttgtttctgttcagcatcattaaggacagcttcaa |
4245988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 4315263 - 4315416
Alignment:
| Q |
61 |
ctttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctg |
160 |
Q |
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|||| ||||| ||||| |||||| | || ||||| | ||| | |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
4315263 |
ctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctttgagatcatcaagccatttgttaacagcagagtctttgaactgtttctg |
4315362 |
T |
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| Q |
161 |
ttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaacctttg |
214 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4315363 |
ttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacctttg |
4315416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 4306401 - 4306559
Alignment:
| Q |
61 |
ctttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctg |
160 |
Q |
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| T |
4306401 |
ctttggtagagatgtggtcgagaagatcatcagtaaaataaacagcatctttgagatcatcaagccatttgataacagcagagtctttgagctgtttctg |
4306500 |
T |
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| Q |
161 |
ttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaacctttgcacca |
219 |
Q |
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||||||||| || | |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4306501 |
ttcagcatcgttcaacacagcttcaacagcataaagagtgttcttcaacctttgaacca |
4306559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 4309290 - 4309442
Alignment:
| Q |
72 |
atgtgatcgagagggtcgtcagctatatagagagcatctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcat |
171 |
Q |
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||||| |||| | |||| ||||| | ||||| ||| |||||||| ||||| ||||| || |||| |||||||||||||| |||||||| || |||||| |
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| T |
4309290 |
atgtggtcgaaaaggtcatcagcaacatagacagcgtctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcat |
4309389 |
T |
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| Q |
172 |
taaggacagcttcaacagcataaagagtgttcttcaacctttgcaccagattg |
224 |
Q |
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| || |||||||| ||||||||||||||||| ||||||||||| |||| |||| |
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| T |
4309390 |
tcagcacagcttccacagcataaagagtgttattcaacctttgaaccaaattg |
4309442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 238
Target Start/End: Complemental strand, 4253213 - 4253060
Alignment:
| Q |
85 |
ggtcgtcagctatatagagagcatctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagcttc |
184 |
Q |
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|||| ||||||| ||||| | || ||||||| ||||| | ||| |||||| ||||| || ||||| ||||| || || ||||| |||| |||||||| |
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| T |
4253213 |
ggtcatcagctacatagacaacacctttgagatcatcgatccatctgttaatagcagggtttttgaactgtttttgctccgcatcgttaaacacagcttc |
4253114 |
T |
|
| Q |
185 |
aacagcataaagagtgttcttcaacctttgcaccagattgctgtcaaccttctt |
238 |
Q |
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||||||||||||||||||||||||||||| |||| |||| |||||| ||||| |
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| T |
4253113 |
cacagcataaagagtgttcttcaacctttggaccaaattgacgtcaactttctt |
4253060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 41932657 - 41932504
Alignment:
| Q |
61 |
ctttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctg |
160 |
Q |
| |
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||||||||||||||||||| | | ||| ||||| | ||||| |||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
41932657 |
ctttagtagagatgtgatccaaaatgtcatcagcaacatagacagcatctttgagatcatcgagccatttgttaacagcagagtctttgaactgtttctg |
41932558 |
T |
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| Q |
161 |
ttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaacctttg |
214 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
41932557 |
ttcagcatcattcaagacagcttcaacagcataaagagtgttcttcaacctttg |
41932504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 34803279 - 34803442
Alignment:
| Q |
61 |
ctttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctg |
160 |
Q |
| |
|
|||||||||| |||||||| | | |||| ||||||| ||| | ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
34803279 |
ctttagtagaaatgtgatccaaaaggtcatcagctacataaacagcgtctttgaggtcatcgagccagttgttaacagcagagtctttgatctgtttcta |
34803378 |
T |
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| Q |
161 |
ttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaacctttgcaccagattg |
224 |
Q |
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||| ||||||| ||| |||||||| || ||||| |||| |||||||||| ||| |||| |||| |
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| T |
34803379 |
ttccgcatcataaagaacagcttctactgcatatggagtattcttcaaccgttgtaccaaattg |
34803442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 6060700 - 6060792
Alignment:
| Q |
90 |
tcagctatatagagagcatctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagct |
182 |
Q |
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||||||| ||||| |||||||||||| |||| ||||||||||| ||| |||| || || |||||||| |||||||||||||| |||||| |
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| T |
6060700 |
tcagctacatagacagcatctttgagatcattgagccagttgttgacatcagaatccctggtttgtttcttctcagcatcattaagcacagct |
6060792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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