View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_low_27 (Length: 247)
Name: NF15343_low_27
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39161533 - 39161764
Alignment:
| Q |
1 |
ctcgtttttctttttaactttataataaatcttttgggataagtaagctgatgctgatatactttgttgttgtgctgcgttaaatttttcaaatcataaa |
100 |
Q |
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| T |
39161533 |
ctcgtttttctttttaactttataataaatcttttgggataagtaagctgatgctgatatactttgttgttgtgctgcgttaaatttttcaaatcataaa |
39161632 |
T |
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| Q |
101 |
tcacctcgcaggtttccatattttttgccctgctttgttatatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatgaatcttaa |
200 |
Q |
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| T |
39161633 |
tcacctcgcaggtttccatattttttgccctgctttgttatatcagcttttgcatttgcagtagcaattgcctgcatttggttaccggtatgaatcttaa |
39161732 |
T |
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| Q |
201 |
tttcctcagccatatatatgtagtgcagctat |
232 |
Q |
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| T |
39161733 |
tttcctcagccatatatatgtagtgcggctat |
39161764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 2607432 - 2607518
Alignment:
| Q |
106 |
tcgcaggtttccatattttttgccctgctttgttatatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatg |
192 |
Q |
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| T |
2607432 |
tcgcaggtttccatatttcttgccttccatttcgatatcagcttttgcgtttgtggtagcaattgcctgcatctggcttccggtatg |
2607518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 2622245 - 2622302
Alignment:
| Q |
141 |
tatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatgaatctt |
198 |
Q |
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| T |
2622245 |
tatcagctatggcatttgttgtagcgatttcctgcatttggctaccggtatgtatctt |
2622302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 26369803 - 26369719
Alignment:
| Q |
108 |
gcaggtttccatattttttgccctgctttgttatatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatg |
192 |
Q |
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| T |
26369803 |
gcaggtttccatatttcttgccttccatttcaatatcagcttttgcgtttgcggtagcaattgcctgcatctggcttccggtatg |
26369719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 16528465 - 16528375
Alignment:
| Q |
108 |
gcaggtttccatattttttgccctgctttgttatatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatgaatctt |
198 |
Q |
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| T |
16528465 |
gcaggttcccatacttcttgccctgctttataatatcagtacttgcatttacagtagtaattgcctgcatctggattccggtatgtatctt |
16528375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 16569912 - 16569822
Alignment:
| Q |
108 |
gcaggtttccatattttttgccctgctttgttatatcagcttttgcatttgtagtagcaattgcctgcatttggttaccggtatgaatctt |
198 |
Q |
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||||||| ||||| || |||||||||||| | ||||||| |||||||| ||||| |||||||||||| ||| | |||||||| ||||| |
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| T |
16569912 |
gcaggttcccatacttcttgccctgctttataatatcagtacttgcatttacagtagtaattgcctgcatctggattccggtatgtatctt |
16569822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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