View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_low_3 (Length: 706)
Name: NF15343_low_3
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_low_3 |
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| [»] scaffold1436 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Original strand, 30927725 - 30928149
Alignment:
| Q |
12 |
tgagatgaagaaaggtatcaccgtaataatgatgatgttaatgattatctttgttgtgaatcaagtatctgacgcaactcaatcaatagatggttgtaaa |
111 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
30927725 |
tgagatgaagaaaggtatcaccataataatgatgatgttaatgattatctttgttgtgaatcaagtatccgacgcaactcaatcaatagatgcttgtaaa |
30927824 |
T |
|
| Q |
112 |
tatgattgtcgtctttgtgagcagaattgcgttgatgcatgtttcagtggaggatgtattgtagaatgtaaggaaagaaactgcccatgttgtcttcgta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30927825 |
tatgattgtcgtctttgtgagcagaattgcgttgatgcatgtttcagtggaggatgtattgtagaatgtaagaaaagaaactgcccatgttgtcttcgta |
30927924 |
T |
|
| Q |
212 |
gatccctgcatgcgcaaaatgattaaagagctttagggcttgcaacattataattaaataattcttgtatgttatgtgaaccatataattaaataattat |
311 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30927925 |
gttccctgcatgcgcaaaatgattaaagagctttagggcttgcaatattataattaaataattcttgtatgttatgtgaaccatataattaaataattat |
30928024 |
T |
|
| Q |
312 |
tattcaagtctacttctaacttcatttctctttgcattaatctatagactatgagtatgtttataagagtgaactac-------tcgtcatgatattttt |
404 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
30928025 |
tgttcaagtctacttctaacttcatttctctttggattaatctatagactatgagtatgttcataagagtgaactactcgtcagtcgtcatgatattttt |
30928124 |
T |
|
| Q |
405 |
cataaataaaaattattggcttagg |
429 |
Q |
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||||||||||||||||||||||||| |
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| T |
30928125 |
cataaataaaaattattggcttagg |
30928149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Original strand, 30920667 - 30921086
Alignment:
| Q |
12 |
tgagatgaagaaaggtatcaccgtaataatgatgatgttaatgattatctttgttgtgaatcaagtatctgacgcaactcaatcaatagatggttgtaaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
30920667 |
tgagatgaagaaaggtatcaccgtaataatgatgatgttaatggttatctttgttgtgaatcaagtatccgacgcaactcaatcaatagatgcttgtaaa |
30920766 |
T |
|
| Q |
112 |
tatgattgtcgtctttgtgagcagaattgcgttgatgcatgtttcagtggaggatgtattgtagaatgtaaggaaagaaactgcccatgttgtcttcgta |
211 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30920767 |
tatgattgtggtctttgtgagcagaattgcgttgatgcatgtttcagtggaggatgtattgtagaatgtaaggaaagaaactgcccatgttgtcttcgta |
30920866 |
T |
|
| Q |
212 |
gatccctgcatgcgcaaaatgattaaagagct---ttagggc-ttgcaacattataattaaataattcttgtatgttatgtgaaccatataattaaataa |
307 |
Q |
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| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30920867 |
gttccctgcatgcgcaaaatgattaaagagctttattagggctttgcaacattataattaaataattcttgtatgttatgtgaaccatataattaaataa |
30920966 |
T |
|
| Q |
308 |
ttattattcaagtctacttctaacttcatttctctttgcattaatctatagactatgagtatgtttataagagtgaactactcgtcatgatatttttcat |
407 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |
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| T |
30920967 |
ttattgttcaagtctacttctaacttcatttctctttgcattaatctatagactatgagtatgttcataagagtgagctattcgtcatgatatttttcat |
30921066 |
T |
|
| Q |
408 |
aaataaaaattattggctta |
427 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
30921067 |
aaataaaaattattggctta |
30921086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 500 - 689
Target Start/End: Original strand, 30928220 - 30928409
Alignment:
| Q |
500 |
tgacttttgattcccacatcattttaaggtcaactttgatgatatgttcaagtcatgaatgataaggaaagaatattgtagacaagtcactaaaaatgca |
599 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
30928220 |
tgacttttgattcccacatcattttgaggtcaactttgatgatatgttccagtcatgaatgataaggaaaaaatatcgtagacaagtcactaaaaatgca |
30928319 |
T |
|
| Q |
600 |
tagtgatagacattaaatctaataatgcatagtgatagacattaaaaacagaacaaatagaatttgcaaaagaggtgacacagagaatat |
689 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30928320 |
tagtgatagacattaaatctaataatgcatagtgatagacattaaaaacagaacaaatagaatttgcaaaagaggtgacacagagaatat |
30928409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 502 - 593
Target Start/End: Original strand, 30921174 - 30921265
Alignment:
| Q |
502 |
acttttgattcccacatcattttaaggtcaactttgatgatatgttcaagtcatgaatgataaggaaagaatattgtagacaagtcactaaa |
593 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
30921174 |
acttttgattcccacatcattttgaggtcaactttggtgatatgtccaagtcatgaatgacatggaaagaatattgtagacaagtcactaaa |
30921265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 27835413 - 27835490
Alignment:
| Q |
14 |
agatgaagaaaggtatcaccgtaataatgatgatgttaatgattatctttgttgtgaatcaagtatctgacgcaactc |
91 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||||| ||||| || ||||||| || ||||| | ||||||||| |
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| T |
27835413 |
agatgaagaaatgtatcaccttaataatgatgatgttaataattatgttggttgtgactcgagtatgtcacgcaactc |
27835490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 3389144 - 3389056
Alignment:
| Q |
14 |
agatgaagaaaggtatcaccgtaataatgatgatgttaatgattatctttgttgtgaatcaagtatctgacgcaactcaatcaatagat |
102 |
Q |
| |
|
||||||||||| |||||||| | || ||||||||| |||||||||| |||||||||| |||||||||||| ||||||||||| |||||| |
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| T |
3389144 |
agatgaagaaaagtatcaccttgatgatgatgatggtaatgattatgtttgttgtgactcaagtatctgatgcaactcaatctatagat |
3389056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 24649189 - 24649134
Alignment:
| Q |
40 |
atgatgatgttaatgattatctttgttgtgaatcaagtatctgacgcaactcaatc |
95 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||||| |||||||||||||| |
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|
| T |
24649189 |
atgataatgttaatgattatgtttgttgtgactcaagtatgcgacgcaactcaatc |
24649134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 17016359 - 17016435
Alignment:
| Q |
19 |
aagaaaggtatcaccgtaataatgatgatgttaatgattatctttgttgtgaatcaagtatctgacgcaactcaatc |
95 |
Q |
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||||||||||||||| | || |||||||||||| ||||||| | ||||| | |||||| | || |||||||||||| |
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| T |
17016359 |
aagaaaggtatcaccatgatgatgatgatgttagtgattatgctcgttgttactcaagtgtgtggcgcaactcaatc |
17016435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 11990572 - 11990484
Alignment:
| Q |
14 |
agatgaagaaaggtatcaccgtaataatgatgatgttaatgattatctttgttgtgaatcaagtatctgacgcaactcaatcaatagat |
102 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||| |||||||||| | ||||||| |||||| | ||| ||||||||||| |||||| |
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| T |
11990572 |
agatgaagaaaagtatcaccttaatgatgatgatggtaatgattatgatcgttgtgactcaagtttgtgatgcaactcaatctatagat |
11990484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 10015501 - 10015581
Alignment:
| Q |
15 |
gatgaagaaaggtatcaccgtaataatgatgatgttaatgattatctttgttgtgaatcaagtatctgacgcaactcaatc |
95 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||| |||| ||||||||| |||||||| || ||||||||||| |
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| T |
10015501 |
gatgaagaaaggtatcactacgatgatgatgatgttaatggttatgcttgttgtgactcaagtatgcgaggcaactcaatc |
10015581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1436 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold1436
Description:
Target: scaffold1436; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 794 - 714
Alignment:
| Q |
15 |
gatgaagaaaggtatcaccgtaataatgatgatgttaatgattatctttgttgtgaatcaagtatctgacgcaactcaatc |
95 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |||| ||||||||| |||||| | || ||||||||||| |
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|
| T |
794 |
gatgaagaaaggtatcactacgatgatgatgatgttaatggttatgcttgttgtgactcaagtttgcgaggcaactcaatc |
714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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