View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15343_low_30 (Length: 238)

Name: NF15343_low_30
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15343_low_30
NF15343_low_30
[»] chr3 (7 HSPs)
chr3 (20-166)||(52623897-52624043)
chr3 (104-228)||(52602788-52602912)
chr3 (117-228)||(52623786-52623897)
chr3 (145-185)||(14078089-14078129)
chr3 (145-185)||(40799242-40799282)
chr3 (145-185)||(47406196-47406236)
chr3 (145-185)||(52283134-52283174)
[»] chr7 (5 HSPs)
chr7 (128-185)||(19414012-19414069)
chr7 (145-185)||(28623136-28623176)
chr7 (145-185)||(9710580-9710620)
chr7 (145-185)||(16557365-16557405)
chr7 (145-185)||(16608257-16608297)
[»] chr6 (4 HSPs)
chr6 (128-183)||(27167426-27167481)
chr6 (145-185)||(17380922-17380962)
chr6 (145-185)||(19833741-19833781)
chr6 (145-185)||(21234504-21234544)
[»] scaffold0300 (1 HSPs)
scaffold0300 (128-186)||(11415-11473)
[»] scaffold0273 (1 HSPs)
scaffold0273 (145-185)||(22363-22403)
[»] scaffold0032 (1 HSPs)
scaffold0032 (128-186)||(78704-78762)
[»] chr5 (1 HSPs)
chr5 (147-189)||(24163029-24163071)
[»] chr1 (2 HSPs)
chr1 (147-185)||(20908543-20908581)
chr1 (131-176)||(19474953-19474998)
[»] scaffold0578 (1 HSPs)
scaffold0578 (131-176)||(5807-5852)
[»] scaffold0205 (1 HSPs)
scaffold0205 (145-185)||(665-705)
[»] scaffold0064 (1 HSPs)
scaffold0064 (145-185)||(44587-44627)
[»] chr8 (2 HSPs)
chr8 (145-185)||(30422174-30422214)
chr8 (145-185)||(45539209-45539249)
[»] chr4 (2 HSPs)
chr4 (145-185)||(13576847-13576887)
chr4 (145-185)||(37436264-37436304)
[»] chr2 (1 HSPs)
chr2 (145-185)||(24843545-24843585)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 52624043 - 52623897
Alignment:
Q  20 ctataaattgtttgagtttttcttcgatttctttttcaaagtgttaagatcaatctagacaaaatctgatgttgcagtttgaatgcagcagcaatacaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52624043 ctataaattgtttgagtttttcttcgatttctttttcaaagtgttaagatcaatctagacaaaatctgatgttgcagtttgaatgcatcagcaatacaaa 52623944  T
Q  120 agacatgaataaaagataaagaattagagagagaagaaagacacaaa 166  Q
    |||| | ||||||||||||||||||||||| ||||||||||||||||    
T  52623943 agacgtaaataaaagataaagaattagagaaagaagaaagacacaaa 52623897  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 52602912 - 52602788
Alignment:
Q  104 gcagcagcaatacaaaagacatgaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttataaataagagttgt 203  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  52602912 gcagcagcaatacaaaagacgtaaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttacaaataagagtagt 52602813  T
Q  204 acagtccctacgccaaaatgatgat 228  Q
     || |||| ||  ||||||||||||    
T  52602812 ccaatccccacatcaaaatgatgat 52602788  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 52623897 - 52623786
Alignment:
Q  117 aaaagacatgaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttataaataagagttgtacagtccctacgc 216  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || || |||| ||      
T  52623897 aaaagacgtaaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttacaaataagagtagttcattccccactt 52623798  T
Q  217 caaaatgatgat 228  Q
    ||||||||||||    
T  52623797 caaaatgatgat 52623786  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 14078129 - 14078089
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  14078129 agagagagaagaaagacacaaagcaatttatagtggttcct 14078089  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 40799242 - 40799282
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  40799242 agagagagaagaaagacacaaagcaatttatacaggttcct 40799282  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 47406236 - 47406196
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  47406236 agagagagaagaaagacacaaagcaatttatacaggttcct 47406196  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 52283134 - 52283174
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  52283134 agagagagaagaaagacacaaagcaatttatacaggttcct 52283174  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 19414012 - 19414069
Alignment:
Q  128 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    |||||||||||||| | ||||||||||||||||||||||  |||||||| ||||||||    
T  19414012 ataaaagataaagagtcagagagagaagaaagacacaaaacaatttatactggttcct 19414069  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 28623176 - 28623136
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  28623176 agagagagaagaaagacacaaagcaatttatataggttcct 28623136  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 9710620 - 9710580
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  9710620 agagagagaagaaagacacaaagcaatttatacaggttcct 9710580  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 16557405 - 16557365
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  16557405 agagagagaagaaagacacaaagcaatttatacaggttcct 16557365  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 16608257 - 16608297
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  16608257 agagagagaagaaagacacaaagcaatttatacaggttcct 16608297  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 27167481 - 27167426
Alignment:
Q  128 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttc 183  Q
    ||||| |||||||| | |||||||||||| |||||||||| |||||||||||||||    
T  27167481 ataaacgataaagagtcagagagagaagacagacacaaagcaatttatattggttc 27167426  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 17380922 - 17380962
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  17380922 agagagagaagaaagacacaaagcaatttatacaggttcct 17380962  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 19833781 - 19833741
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  19833781 agagagagaagaaagacacaaagcaatttataaaggttcct 19833741  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 21234504 - 21234544
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  21234504 agagagagaagaaagacacaaagcaatttatacaggttcct 21234544  T

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Target: scaffold0300 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 11415 - 11473
Alignment:
Q  128 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctc 186  Q
    |||||||||||||| | ||||||||||||||||||| ||  |||||||| |||||||||    
T  11415 ataaaagataaagagtcagagagagaagaaagacactaaacaatttataatggttcctc 11473  T

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Target: scaffold0273 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 22363 - 22403
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  22363 agagaaagaagaaagacacaaagtaatttatagtggttcct 22403  T

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Target: scaffold0032 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 78704 - 78762
Alignment:
Q  128 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctc 186  Q
    |||||||||||||| |||| ||||||| |||||| ||||| |||||||| | |||||||    
T  78704 ataaaagataaagagttagggagagaacaaagacgcaaagcaatttataatagttcctc 78762  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 24163029 - 24163071
Alignment:
Q  147 agagagaagaaagacacaaagtaatttatattggttcctctta 189  Q
    ||||||||||||||||||||  ||||| |||||||||||||||    
T  24163029 agagagaagaaagacacaaaacaatttgtattggttcctctta 24163071  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 20908543 - 20908581
Alignment:
Q  147 agagagaagaaagacacaaagtaatttatattggttcct 185  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  20908543 agagagaagacagacacaaagcaatttatattggttcct 20908581  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 19474998 - 19474953
Alignment:
Q  131 aaagataaagaattagagagagaagaaagacacaaagtaatttata 176  Q
    ||||||||||| | ||||||||||||||||||||||  ||||||||    
T  19474998 aaagataaagagtcagagagagaagaaagacacaaatcaatttata 19474953  T

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Target: scaffold0578 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 5852 - 5807
Alignment:
Q  131 aaagataaagaattagagagagaagaaagacacaaagtaatttata 176  Q
    ||||||||||| | ||||||||||||||||||||||  ||||||||    
T  5852 aaagataaagagtcagagagagaagaaagacacaaatcaatttata 5807  T

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Target: scaffold0205 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 705 - 665
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  705 agagagagaagaaagacacaaagcaatttatacaggttcct 665  T

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Target: scaffold0064 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 44627 - 44587
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  44627 agagagagaagaaagacacaaagcaatttatacaggttcct 44587  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 30422214 - 30422174
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  30422214 agagagagaagaaagacacaaagcaatttatacaggttcct 30422174  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 45539249 - 45539209
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  45539249 agagagagaagaaagacacaaagcaatttatacaggttcct 45539209  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 13576887 - 13576847
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  13576887 agagagagaagaaagacacaaagcaatttatacaggttcct 13576847  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 37436304 - 37436264
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  37436304 agagagagaagaaagacacaaagcaatttatacaggttcct 37436264  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 24843545 - 24843585
Alignment:
Q  145 agagagagaagaaagacacaaagtaatttatattggttcct 185  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  24843545 agagagagaagaaggacacaaagaaatttatagtggttcct 24843585  T

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