View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15343_low_32 (Length: 235)

Name: NF15343_low_32
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15343_low_32
NF15343_low_32
[»] chr8 (6 HSPs)
chr8 (15-235)||(41931023-41931244)
chr8 (151-212)||(4050438-4050500)
chr8 (118-192)||(45371069-45371143)
chr8 (137-209)||(1310129-1310201)
chr8 (118-210)||(1318609-1318701)
chr8 (166-214)||(18735797-18735845)
[»] chr1 (7 HSPs)
chr1 (114-210)||(6025937-6026033)
chr1 (151-208)||(15956878-15956935)
chr1 (155-212)||(46937566-46937623)
chr1 (136-212)||(47847979-47848054)
chr1 (160-210)||(13277625-13277675)
chr1 (120-181)||(15255191-15255252)
chr1 (157-213)||(35655430-35655486)
[»] chr4 (6 HSPs)
chr4 (151-209)||(27722416-27722474)
chr4 (153-209)||(4145259-4145315)
chr4 (155-210)||(33714235-33714290)
chr4 (155-212)||(26275548-26275605)
chr4 (151-208)||(37579594-37579651)
chr4 (151-191)||(207488-207528)
[»] chr2 (4 HSPs)
chr2 (155-212)||(39597573-39597630)
chr2 (129-209)||(28804335-28804415)
chr2 (153-212)||(41012701-41012760)
chr2 (154-212)||(29378505-29378563)
[»] chr7 (9 HSPs)
chr7 (156-212)||(37233413-37233469)
chr7 (120-209)||(2219498-2219587)
chr7 (129-192)||(24942511-24942574)
chr7 (129-192)||(24945623-24945686)
chr7 (138-209)||(38622870-38622941)
chr7 (158-212)||(29440324-29440378)
chr7 (143-176)||(21450951-21450984)
chr7 (126-190)||(28989994-28990058)
chr7 (138-210)||(29000465-29000540)
[»] chr6 (6 HSPs)
chr6 (151-217)||(19390935-19391001)
chr6 (157-212)||(3736988-3737043)
chr6 (151-206)||(5730197-5730252)
chr6 (114-176)||(4381951-4382013)
chr6 (121-169)||(27832843-27832891)
chr6 (158-210)||(29165841-29165893)
[»] chr3 (7 HSPs)
chr3 (151-189)||(14794298-14794336)
chr3 (151-208)||(2990986-2991043)
chr3 (160-209)||(29208264-29208313)
chr3 (155-209)||(162902-162956)
chr3 (155-212)||(54084308-54084365)
chr3 (151-191)||(38884080-38884120)
chr3 (151-215)||(54838575-54838639)
[»] chr5 (3 HSPs)
chr5 (160-212)||(39647140-39647192)
chr5 (151-217)||(11257719-11257785)
chr5 (130-182)||(631474-631526)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 41931244 - 41931023
Alignment:
Q  15 atatgaacatacaagggactcctaaaatgcctacatctttccatttaagtaa-gcattttggtcttctaatatgaatcttaagcagtttgatcaaatcca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41931244 atatgaacatacaagggactcctaaaatgcctacatctttccatttaagtaaagcattttggtcttctaatatgaatcttaagcagtttgatcaaatcca 41931145  T
Q  114 gctgcacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41931144 gctgcacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgca 41931045  T
Q  214 acaccattgtgtgctgctattc 235  Q
    ||||||||||||||||||||||    
T  41931044 acaccattgtgtgctgctattc 41931023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 4050500 - 4050438
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaataac-aatttattcaaattccgc 212  Q
    ||||||||||||||| |||||||||| ||| ||| ||||||||| | ||| ||||||||||||    
T  4050500 tttgacaatattttggactaaatagcatatggtgaaacaataacgatttttttcaaattccgc 4050438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 45371069 - 45371143
Alignment:
Q  118 cacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaata 192  Q
    ||||||| ||||||||||||| || ||  | | |||||||| ||||||||||||||||| ||| | |||||||||    
T  45371069 cacaacagtgctatagtgccgttatagtagctatttgacaacattttgtactaaatagcatattgcggaacaata 45371143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 1310201 - 1310129
Alignment:
Q  137 cgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 209  Q
    ||||| ||||| | ||| ||||||| |||||||||||||  ||||  ||||||||| |||||| |||||||||    
T  1310201 cgctatagccgctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaattc 1310129  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 1318609 - 1318701
Alignment:
Q  118 cacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 210  Q
    |||||||||||||||| | | ||||||| | | |||||||| || | || ||||||||||||| | ||||||||||  | || ||||||||||    
T  1318609 cacaacaatgctatagcgtcactacagctgctatttgacaacatgtagttctaaatagcttattgcggaacaataaggacttgttcaaattcc 1318701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 18735845 - 18735797
Alignment:
Q  166 tactaaatagcttatcgtggaacaataacaatttattcaaattccgcaa 214  Q
    ||||||||||  || ||||||| ||||||||||| ||||||||||||||    
T  18735845 tactaaatagagtaccgtggaaaaataacaatttgttcaaattccgcaa 18735797  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 6025937 - 6026033
Alignment:
Q  114 gctgcacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 210  Q
    ||||| ||||| |||||||| || |||| ||||  | |||||||| ||||||||||||||||| ||||| ||||||||||| |||| ||||||||||    
T  6025937 gctgcccaacagtgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaattcc 6026033  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 15956935 - 15956878
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaatt 208  Q
    |||||||| | ||||||||||||||| ||| | |||||||||||||||| ||||||||    
T  15956935 tttgacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaatt 15956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 46937623 - 46937566
Alignment:
Q  155 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    ||||||||||||||||||||||  |||| ||||||||| || ||| ||||||||||||    
T  46937623 acaatattttgtactaaatagcgcatcgcggaacaatagcactttgttcaaattccgc 46937566  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 47847979 - 47848054
Alignment:
Q  136 ccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    |||||| ||||| | |||||||| ||||||||| |||| || ||||||||||||||| | |||| ||||||||||||    
T  47847979 ccgctatagccgctatttgacaacattttgtac-aaatggcatatcgtggaacaatagcgatttgttcaaattccgc 47848054  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 13277675 - 13277625
Alignment:
Q  160 attttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 210  Q
    ||||||||||||||||| ||| ||||||||||||| ||||  |||||||||    
T  13277675 attttgtactaaatagcgtatagtggaacaataacgatttgctcaaattcc 13277625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 15255191 - 15255252
Alignment:
Q  120 caacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatc 181  Q
    ||||| |||||||||||||||| ||||  ||||| |||||||| || |||||||||| ||||    
T  15255191 caacattgctatagtgccgctatagccactgtttcacaatattatgcactaaatagcatatc 15255252  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 35655430 - 35655486
Alignment:
Q  157 aatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgca 213  Q
    |||||||||||||||||||| ||  | ||||  |||||||||| |||||||||||||    
T  35655430 aatattttgtactaaatagcatagtgcggaattataacaatttgttcaaattccgca 35655486  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 27722416 - 27722474
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 209  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||  |||||||||    
T  27722416 tttgacaatattttgtacttaatagcatatcgtggaacaatagcaattagttcaaattc 27722474  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 4145259 - 4145315
Alignment:
Q  153 tgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 209  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||| |||||||||    
T  4145259 tgacaacattttgtactgaatagcgtatggtggaacaataacaatttgttcaaattc 4145315  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 33714235 - 33714290
Alignment:
Q  155 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 210  Q
    ||||||||||||||||||| |||||||||||||||| | | |||| ||||||||||    
T  33714235 acaatattttgtactaaatggcttatcgtggaacaacagcgatttgttcaaattcc 33714290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 26275548 - 26275605
Alignment:
Q  155 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    |||||||||||||||||||||| |||  |||||||||| | |||| ||||||| ||||    
T  26275548 acaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaatcccgc 26275605  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 37579594 - 37579651
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaatt 208  Q
    |||||||| | || |||||||||||| ||||| ||||||||||| ||||||| |||||    
T  37579594 tttgacaacacttagtactaaatagcatatcgcggaacaataacgatttattaaaatt 37579651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 207528 - 207488
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaat 191  Q
    |||||||||| ||||||||||||||| ||||| ||||||||    
T  207528 tttgacaatactttgtactaaatagcatatcgcggaacaat 207488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 39597630 - 39597573
Alignment:
Q  155 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    |||||||||||||||||||||| ||||| ||||||||| | ||||||| |||||||||    
T  39597630 acaatattttgtactaaatagcgtatcgcggaacaatagcgatttatttaaattccgc 39597573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 28804415 - 28804335
Alignment:
Q  129 tatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 209  Q
    ||||||| | ||| ||||||| |||||||||| |||||||||||||||||||  || ||||||| | |||| |||||||||    
T  28804415 tatagtgtcactatagccgttatttgacaatactttgtactaaatagcttattctgaaacaatagcgatttgttcaaattc 28804335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 41012760 - 41012701
Alignment:
Q  153 tgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    |||||||| |||| |||||||||  ||||| |||||||||||||||| ||||||| ||||    
T  41012760 tgacaataatttgcactaaatagtgtatcgaggaacaataacaatttgttcaaataccgc 41012701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 29378563 - 29378505
Alignment:
Q  154 gacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    ||||||| ||||||| ||||||| |||||  |||||||| |||||| ||||||||||||    
T  29378563 gacaatactttgtacaaaatagcgtatcgcagaacaatatcaatttgttcaaattccgc 29378505  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 37233469 - 37233413
Alignment:
Q  156 caatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    |||||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||    
T  37233469 caatattttgtattaaatagtgtatcgtagaacaataacaatttgttcaaattccgc 37233413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 2219498 - 2219587
Alignment:
Q  120 caacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 209  Q
    ||||||||||||||  ||| || | ||| | |||||||||||||||||||||||||| ||||   |||||||||| || | |||||||||    
T  2219498 caacaatgctatagcaccgttataaccgctatttgacaatattttgtactaaatagcatatcagagaacaataacgatatgttcaaattc 2219587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 24942574 - 24942511
Alignment:
Q  129 tatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaata 192  Q
    ||||| ||||||||||| | | |||||||| |||||||||||| |||| |||| ||||||||||    
T  24942574 tatagcgccgctacagctgctatttgacaacattttgtactaattagcgtatcatggaacaata 24942511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 24945686 - 24945623
Alignment:
Q  129 tatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaata 192  Q
    ||||| ||||||||||||| | |||||||| ||||||| |||  |||| |||||||||||||||    
T  24945686 tatagcgccgctacagccgctatttgacaacattttgtgctagttagcgtatcgtggaacaata 24945623  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 38622870 - 38622941
Alignment:
Q  138 gctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 209  Q
    |||| ||||| | |||||||| ||||||| ||||||||  |||| |||||||||| | ||||||||||||||    
T  38622870 gctatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattc 38622941  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 29440324 - 29440378
Alignment:
Q  158 atattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    ||||||||||||||||| | ||||||||||||||| || ||| |||||| |||||    
T  29440324 atattttgtactaaataacatatcgtggaacaatagcagttttttcaaactccgc 29440378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 21450951 - 21450984
Alignment:
Q  143 agccgttgtttgacaatattttgtactaaatagc 176  Q
    |||||||||||||||||| |||||||||||||||    
T  21450951 agccgttgtttgacaatagtttgtactaaatagc 21450984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 28989994 - 28990058
Alignment:
Q  126 tgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaa 190  Q
    ||||||||||| |||||||||| |  |  ||||||||||||||||||||||  || |||||||||    
T  28989994 tgctatagtgctgctacagccgcttatccacaatattttgtactaaatagcaaatagtggaacaa 28990058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 29000465 - 29000540
Alignment:
Q  138 gctacagccgttgtttgacaatattttgtacta--aatagctta-tcgtggaacaataacaatttattcaaattcc 210  Q
    |||||||||||| ||| ||||||||||||||||  |||||| || ||||||||||||| |  ||| ||||||||||    
T  29000465 gctacagccgttatttcacaatattttgtactattaatagcatattcgtggaacaatagctgtttgttcaaattcc 29000540  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 19391001 - 19390935
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgcaacac 217  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||  |||  ||||||||||| ||||    
T  19391001 tttgacaatactttgtactaaatagcttattgtggaacaacaacggtttggtcaaattccgctacac 19390935  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 3737043 - 3736988
Alignment:
Q  157 aatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    |||| |||||||| |||||| |||||  ||||||||||||||| ||||||||||||    
T  3737043 aatagtttgtactgaatagcatatcgcagaacaataacaatttgttcaaattccgc 3736988  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 5730197 - 5730252
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaa 206  Q
    |||||||| ||||||||||||||||| |||| |||||||| | | |||||||||||    
T  5730197 tttgacaagattttgtactaaatagcatatcatggaacaagagcgatttattcaaa 5730252  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 4381951 - 4382013
Alignment:
Q  114 gctgcacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagc 176  Q
    |||||||||||||||| ||  ||| ||| |||| || |||||||| |||||||||||||||||    
T  4381951 gctgcacaacaatgctctacagccactatagcctttatttgacaacattttgtactaaatagc 4382013  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 27832891 - 27832843
Alignment:
Q  121 aacaatgctatagtgccgctacagccgttgtttgacaatattttgtact 169  Q
    |||||| ||||||||| |||| ||||||| || ||||||||||||||||    
T  27832891 aacaatactatagtgctgctatagccgttattcgacaatattttgtact 27832843  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 29165893 - 29165841
Alignment:
Q  158 atattttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 210  Q
    |||||||||| |||||||  ||||  |||||||||||||||| ||||||||||    
T  29165893 atattttgtattaaatagagtatctaggaacaataacaatttgttcaaattcc 29165841  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 14794298 - 14794336
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaaca 189  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  14794298 tttgacaatattttgtactaaatagcgtatcgtggaaca 14794336  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 2990986 - 2991043
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaatt 208  Q
    |||||||| ||||||||||||||||| ||||||||||||| |  ||||| ||||||||    
T  2990986 tttgacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaatt 2991043  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 29208313 - 29208264
Alignment:
Q  160 attttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 209  Q
    ||||||||||||| ||| ||||||||||||||||| |||| |||||||||    
T  29208313 attttgtactaaacagcgtatcgtggaacaataacgatttgttcaaattc 29208264  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 162956 - 162902
Alignment:
Q  155 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 209  Q
    ||||||||||||||||||||||  ||||  ||| ||||||||||| |||||||||    
T  162956 acaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaattc 162902  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 54084365 - 54084308
Alignment:
Q  155 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    ||||||||||| |||||||||| ||| |||||||| || || ||| ||||||||||||    
T  54084365 acaatattttgcactaaatagcgtattgtggaacattatcagtttgttcaaattccgc 54084308  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 38884080 - 38884120
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaat 191  Q
    |||||||||||||||||| ||||||| ||| ||||||||||    
T  38884080 tttgacaatattttgtaccaaatagcatattgtggaacaat 38884120  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 54838639 - 54838575
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgcaac 215  Q
    |||||||| |||||||||||||| ||  | |||||||||| ||||||||  ||||||||| ||||    
T  54838639 tttgacaacattttgtactaaattgcacaccgtggaacaaaaacaatttgctcaaattccccaac 54838575  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 39647140 - 39647192
Alignment:
Q  160 attttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 212  Q
    ||||||||||||||||| |||||  |||||||||| |||| ||||||||||||    
T  39647140 attttgtactaaatagcatatcgcagaacaataacgatttgttcaaattccgc 39647192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 11257785 - 11257719
Alignment:
Q  151 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgcaacac 217  Q
    |||||||| ||||||||||||||||| ||||||  ||||||| | |||| |||| ||||||| ||||    
T  11257785 tttgacaacattttgtactaaatagcatatcgtataacaatagcgatttgttcatattccgctacac 11257719  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 631474 - 631526
Alignment:
Q  130 atagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcg 182  Q
    ||||||| |||| ||||| | | |||||||||||||||||||||||| |||||    
T  631474 atagtgcagctatagccgctatatgacaatattttgtactaaatagcgtatcg 631526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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