View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15343_low_4 (Length: 688)
Name: NF15343_low_4
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 683
Target Start/End: Complemental strand, 38443443 - 38442780
Alignment:
| Q |
18 |
gatcatactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443443 |
gatcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatcaaaatcttcaccaaggagttgatacttgaagcaaacatt |
38443344 |
T |
|
| Q |
118 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
217 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38443343 |
ggaaaccatgaatgaggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacga |
38443244 |
T |
|
| Q |
218 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443243 |
cgatgatcatgaagagcagtaagcctaggttggatttctccaccataagtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtat |
38443144 |
T |
|
| Q |
318 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggaccttctgnnnnnnnaactatgtgaattgtgagatattcaaatttatatgtatt |
417 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38443143 |
tgagaatgaaaagagggttcgagaaaagacggatgaaactgttgggaccttctctttttttaactatgtgaattgtgagatattcaaatttatatgta-t |
38443045 |
T |
|
| Q |
418 |
ttcattaactgaatttccaaaatattaggggggaatgaaagagagttttaaataaataaactatggcaaatatagtttgactaaccgaattttccaaata |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
38443044 |
ttcattaactgaatttccaaaatattaggggggaatgaaagagagttttaaataaataaactatggc-aatatagttggacttaccgaattttccaaata |
38442946 |
T |
|
| Q |
518 |
ctatgggaatgtgaaaattcttatccatgttgtttgttaacttttcacgtgaa-nnnnnnngataagccatgtaacttatcccatgccatttatataagg |
616 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
38442945 |
ctatgggaatgtgaaaattcttat-catgttgtttgttaacttttcacgtgaattttttttgataagccatttaacttatcccatcccatttatataagg |
38442847 |
T |
|
| Q |
617 |
catataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaaccctttgctact |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38442846 |
catataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaaccctttgatact |
38442780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 38182742 - 38183083
Alignment:
| Q |
18 |
gatcatactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38182742 |
gatcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatc |
38182841 |
T |
|
| Q |
118 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38182842 |
ggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacga |
38182941 |
T |
|
| Q |
218 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38182942 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtac |
38183041 |
T |
|
| Q |
318 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183042 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38183083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 38188389 - 38188048
Alignment:
| Q |
18 |
gatcatactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38188389 |
gatcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatc |
38188290 |
T |
|
| Q |
118 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38188289 |
ggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacga |
38188190 |
T |
|
| Q |
218 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188189 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtac |
38188090 |
T |
|
| Q |
318 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188089 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38188048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 38209968 - 38210309
Alignment:
| Q |
18 |
gatcatactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38209968 |
gatcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatc |
38210067 |
T |
|
| Q |
118 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38210068 |
ggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacga |
38210167 |
T |
|
| Q |
218 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210168 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtac |
38210267 |
T |
|
| Q |
318 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210268 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
38210309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 38169858 - 38169517
Alignment:
| Q |
18 |
gatcatactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
117 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38169858 |
gatcatactcgaacataatatgattgagatcttcttcgttataaattgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
38169759 |
T |
|
| Q |
118 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38169758 |
ggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacga |
38169659 |
T |
|
| Q |
218 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38169658 |
agatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtac |
38169559 |
T |
|
| Q |
318 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
359 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38169558 |
tgagagtgtaaagagggttcgagaaaagacgggtgaaactgt |
38169517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 38215614 - 38215274
Alignment:
| Q |
18 |
gatcatactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38215614 |
gatcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaaggagttgatacttgaaacaaacatc |
38215515 |
T |
|
| Q |
118 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38215514 |
ggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacga |
38215415 |
T |
|
| Q |
218 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215414 |
cgatgatcatgaagagcagtaagcctaggttgga-ttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgttttgagagggtac |
38215316 |
T |
|
| Q |
318 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgt |
359 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38215315 |
tgagagtgaaaagagggttcaagaaaagacgggtgaaactgt |
38215274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 38185647 - 38185300
Alignment:
| Q |
18 |
gatcatactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38185647 |
gatcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatc |
38185548 |
T |
|
| Q |
118 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38185547 |
ggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacga |
38185448 |
T |
|
| Q |
218 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38185447 |
cgatgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac |
38185348 |
T |
|
| Q |
318 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
365 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| |||||| |||||||| |
|
|
| T |
38185347 |
tgagagtgaaaataggattcgagaaaagacgtctgaaacagttgggac |
38185300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 38212710 - 38213057
Alignment:
| Q |
18 |
gatcatactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38212710 |
gatcatactcgaacatcatatgattgagatcttcttcgttataaactgggatcaaagcatccaaatcttcaccaagtagttgatacttgaagcaaacatc |
38212809 |
T |
|
| Q |
118 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38212810 |
ggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacga |
38212909 |
T |
|
| Q |
218 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38212910 |
cgatgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctctccatagtttgaaagtgttttgagagggtac |
38213009 |
T |
|
| Q |
318 |
tgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
365 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| |||||| |||||||| |
|
|
| T |
38213010 |
tgagagtgaaaataggattcgagaaaagacgtctgaaacagttgggac |
38213057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 38453052 - 38453380
Alignment:
| Q |
18 |
gatcatactccaacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
117 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38453052 |
gatcatactctaacatcatatgattgagatcttcttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaacatc |
38453151 |
T |
|
| Q |
118 |
ggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccga |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
38453152 |
ggaaaacatgaatatggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccgccgatgtaggaataacga |
38453251 |
T |
|
| Q |
218 |
cgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtac |
317 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38453252 |
cgatgatcatgaagagaagtaagccttggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaa--gttttgagagggtac |
38453349 |
T |
|
| Q |
318 |
tg----agagtgaaaagagggttcgagaaaa |
344 |
Q |
| |
|
| ||| |||||||||| |||||||||| |
|
|
| T |
38453350 |
cgaccaagattgaaaagaggattcgagaaaa |
38453380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 77 - 365
Target Start/End: Complemental strand, 38183479 - 38183191
Alignment:
| Q |
77 |
tcgaaatcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcga |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
38183479 |
tcgaaatcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcga |
38183380 |
T |
|
| Q |
177 |
cggtgatgattttattgtctccgtcgatgtaggaataccgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaa |
276 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183379 |
cgatgatgattttattgtctccaccgatgtaggaataacgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgag |
38183280 |
T |
|
| Q |
277 |
cttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
38183279 |
cttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac |
38183191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 77 - 365
Target Start/End: Original strand, 38214878 - 38215166
Alignment:
| Q |
77 |
tcgaaatcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattacaatcga |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
38214878 |
tcgaaatcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcga |
38214977 |
T |
|
| Q |
177 |
cggtgatgattttattgtctccgtcgatgtaggaataccgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgaa |
276 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214978 |
cgatgatgattttattgtctccaccgatgtaggaataacgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgag |
38215077 |
T |
|
| Q |
277 |
cttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgagaaaagacgggtgaaactgttgggac |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
38215078 |
cttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgagaaaagacgtctgaaacagttgggac |
38215166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 142 - 359
Target Start/End: Original strand, 38197370 - 38197587
Alignment:
| Q |
142 |
tgccatgaggtcggagaagttgatattacaatcgacggtgatgattttattgtctccgtcgatgtaggaataccgacgatgatcatgaagagcagtaagc |
241 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
38197370 |
tgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgaagatgatcatgaagagcagtaagc |
38197469 |
T |
|
| Q |
242 |
ctaggttggatttttccaccataggtaatcatgaacttgactctctccatcgtttgaaagtgttttgagagggtactgagagtgaaaagagggttcgaga |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
38197470 |
ctaggttggatttttccaccataggtaatcatgagcttgactctctccatcgtttgaaagtgtttagagagggtactgagagtgtaaagagggttcgaga |
38197569 |
T |
|
| Q |
342 |
aaagacgggtgaaactgt |
359 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38197570 |
aaagacgggtgaaactgt |
38197587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 38155918 - 38155845
Alignment:
| Q |
29 |
aacatcatatgatcaagatctttttcgttataaaccgggatcaaagcatcgaaatcttcaccaaggagttgata |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38155918 |
aacatcatatgatcaagatcttcttcgttataaaccggaatcaaagcatcgagatcttcaccaaggagttgata |
38155845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 38452129 - 38452167
Alignment:
| Q |
217 |
acgatgatcatgaagagcagtaagcctaggttggatttt |
255 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
38452129 |
acgatgaacatgaagagcagtaagtctaggttggatttt |
38452167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 28341069 - 28340981
Alignment:
| Q |
82 |
atcttcaccaaggagttgatacttgaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcggagaagttgatattac |
170 |
Q |
| |
|
|||||||||| |||| || |||||||||||| |||| | ||||||| | ||||||||| | | |||||||||||| |||||||||| |
|
|
| T |
28341069 |
atcttcaccagggagctggtacttgaagcaagcatcagcaaacatggttgaagaaagcttttcaacgaggtcggagaatttgatattac |
28340981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 28399628 - 28399676
Alignment:
| Q |
65 |
gggatcaaagcatcgaaatcttcaccaaggagttgatacttgaagcaaa |
113 |
Q |
| |
|
|||||||||| ||||| ||||| |||| | ||||||||||||||||||| |
|
|
| T |
28399628 |
gggatcaaagtatcgagatcttgaccaggaagttgatacttgaagcaaa |
28399676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 609 - 673
Target Start/End: Original strand, 53352659 - 53352723
Alignment:
| Q |
609 |
atataaggcatataacttatcacaattatattgtcaagtatattgcacaaacctacctgcaaacc |
673 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||||| |||||||||||||| |||||| |
|
|
| T |
53352659 |
atataaggcatataacttatcccaattatattaccatgtatatcgcacaaacctaccttcaaacc |
53352723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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