View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15343_low_5 (Length: 602)
Name: NF15343_low_5
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15343_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 3 - 585
Target Start/End: Original strand, 437887 - 438469
Alignment:
| Q |
3 |
actgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaat |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
437887 |
actgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaagatcatacaaatacgaaaat |
437986 |
T |
|
| Q |
103 |
ttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtatt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
437987 |
ttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtatt |
438086 |
T |
|
| Q |
203 |
agttgtttcgagtgcaccttctgaacttagttgtttatggaatggaaggagaatcaaacttgtacatttttcattagccgagttatatatatcttcgtga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
438087 |
agttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaacttgtacatttttcattagccgagttgtatatatcttcgtga |
438186 |
T |
|
| Q |
303 |
atggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgttttctaactcta |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
438187 |
atggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgctttctaactcta |
438286 |
T |
|
| Q |
403 |
gctgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggta |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438287 |
gctgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggta |
438386 |
T |
|
| Q |
503 |
aaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataacccctgcggcctgacgagtat |
585 |
Q |
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| T |
438387 |
aaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataactcctacggcctgacgagtat |
438469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 585
Target Start/End: Complemental strand, 28609009 - 28608435
Alignment:
| Q |
11 |
ttgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaatttaaagtt |
110 |
Q |
| |
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||||||||||| | |||||| ||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
28609009 |
ttgggttcctaagtgtcctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcattttt |
28608910 |
T |
|
| Q |
111 |
ggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgttt |
210 |
Q |
| |
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||||| |||||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||| |
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| T |
28608909 |
ggtaaggacccaagattacgatcaacaaataatcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgaacgcaacatcagttgttt |
28608810 |
T |
|
| Q |
211 |
cgagtgcaccttctgaacttagttgtttatggaatggaaggagaatcaaacttgtacatttttcattagccgagttatatatatcttcgtgaatggttgc |
310 |
Q |
| |
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| | ||||||||| | |||||||||||| |||||||||||||||||||| |||||| |||||| ||| | | || ||||| ||||||||||||||||| |
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| T |
28608809 |
caaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcgtgaatggttgc |
28608710 |
T |
|
| Q |
311 |
atagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgttttctaactctagctgggat |
410 |
Q |
| |
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||| | ||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||||||| |||| ||| |||||||||||| ||||||| |
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| T |
28608709 |
atattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggat |
28608610 |
T |
|
| Q |
411 |
tgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaaggccaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||| |
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| T |
28608609 |
cttgtaagattttgtgttccagattggccactaggcttctccatatgagaagcaacaagtgcaccatcacgtccaacgagttcaacaaggtaaagtgcaa |
28608510 |
T |
|
| Q |
511 |
aaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataacccctgcggcctgacgagtat |
585 |
Q |
| |
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||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| | || |||||||||| |
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| T |
28608509 |
aaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcttgacgagtat |
28608435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 31 - 570
Target Start/End: Complemental strand, 13660360 - 13659821
Alignment:
| Q |
31 |
ccattctccatgcaacagctaaggcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacg |
130 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| || | ||| || ||||||||||| ||| |
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| T |
13660360 |
ccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacg |
13660261 |
T |
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| Q |
131 |
gtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaactt |
230 |
Q |
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| T |
13660260 |
atcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactt |
13660161 |
T |
|
| Q |
231 |
agttgtttatggaatggaaggagaatcaaacttgtacatttttcattagccgagttatatatatcttcgtgaatggttgcatagtttgacacaacattta |
330 |
Q |
| |
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| ||||||||||||||||| | ||||| ||||| | |||||||||||| ||||||||||| || || |||||||||| |||| |||||||||||||| |
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| T |
13660160 |
aagtgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcagagttatatatgtcctcatgaatggttgaataggatgacacaacattta |
13660061 |
T |
|
| Q |
331 |
gtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgttttctaactctagctgggattgtgtaagattttgtgttcc |
430 |
Q |
| |
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|||| |||||| | |||||||||||||||| | ||||||||| ||||| ||||| ||||| ||||| |||||| |||||||||||| | ||| |
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| T |
13660060 |
aggtttcgactctgacagcatcatatgcctctccaagtgcttcaaatgtattattaatgctttcttgctctacttgggatcttgtaagattttgcgctcc |
13659961 |
T |
|
| Q |
431 |
agattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaatt |
530 |
Q |
| |
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| T |
13659960 |
aggttggttactaggcttatccatatgagcggcaacaagtgcaccagtacgtcctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaatt |
13659861 |
T |
|
| Q |
531 |
ctagtggcattgaaatattcaatgaggctaataacccctg |
570 |
Q |
| |
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||||| ||||||||| |||||| |||||| |||||||||| |
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| T |
13659860 |
ctagtagcattgaaagattcaacgaggctgataacccctg |
13659821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 569
Target Start/End: Complemental strand, 13652861 - 13652322
Alignment:
| Q |
30 |
gccattctccatgcaacagctaaggcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcac |
129 |
Q |
| |
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||||| ||||||||||||| ||||||||| | |||||||| || |||||||| ||||||||||| ||||| || | | ||||||| |||||||| || |
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| T |
13652861 |
gccatcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattac |
13652762 |
T |
|
| Q |
130 |
ggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaact |
229 |
Q |
| |
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| || ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||| |
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| T |
13652761 |
gatcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaact |
13652662 |
T |
|
| Q |
230 |
tagttgtttatggaatggaaggagaatcaaacttgtacatttttcattagccgagttatatatatcttcgtgaatggttgcatagtttgacacaacattt |
329 |
Q |
| |
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|| ||||||||||||||||| | ||||| ||||| |||||||||||| || |||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
13652661 |
taagtgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacattt |
13652562 |
T |
|
| Q |
330 |
agtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgttttctaactctagctgggattgtgtaagattttgtgttc |
429 |
Q |
| |
|
| ||| ||||||||| |||||| || |||||| ||||||||||| ||||| ||||| ||||| ||||| |||||| ||||||||||||| || |
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| T |
13652561 |
aaggttcggactctaacagcatcgtacgcctctccaaatgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctc |
13652462 |
T |
|
| Q |
430 |
cagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaat |
529 |
Q |
| |
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||| ||| |||||| || |||||||||| ||||||||| ||||| |||||| || ||||| ||||||||| ||||||||||||||||||||| |
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| T |
13652461 |
caggttgcacactaggcttatccatatgagcagcaacaagtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaat |
13652362 |
T |
|
| Q |
530 |
tctagtggcattgaaatattcaatgaggctaataacccct |
569 |
Q |
| |
|
|||||||||||||||| | | ||||||| | ||||||||| |
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|
| T |
13652361 |
tctagtggcattgaaagactgaatgaggttgataacccct |
13652322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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