View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15343_low_8 (Length: 454)

Name: NF15343_low_8
Description: NF15343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15343_low_8
NF15343_low_8
[»] chr8 (5 HSPs)
chr8 (1-443)||(1768873-1769319)
chr8 (1-181)||(1801554-1801734)
chr8 (1-182)||(1784744-1784925)
chr8 (1-175)||(1772544-1772718)
chr8 (32-181)||(1777541-1777690)
[»] chr3 (2 HSPs)
chr3 (1-181)||(25727524-25727704)
chr3 (277-361)||(35558883-35558962)
[»] chr5 (2 HSPs)
chr5 (51-114)||(6807571-6807634)
chr5 (51-114)||(6814356-6814419)
[»] chr7 (1 HSPs)
chr7 (274-327)||(8633778-8633832)
[»] chr1 (2 HSPs)
chr1 (274-336)||(38902172-38902233)
chr1 (274-326)||(4552219-4552271)
[»] chr6 (1 HSPs)
chr6 (280-355)||(15064578-15064654)


Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 1768873 - 1769319
Alignment:
Q  1 atgtcatcaaaggttgatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1768873 atgtcatcaaaggttgatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatg 1768972  T
Q  101 accagctgattttagatcagttgcaaccttataccaacaccatgcaccatggatacctccatgaatcaacacaaagtgcttttcctgtttgaacatcttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1768973 accagctgattttagatcagttgcaaccttataccaacaccatgcaccatggatgcctccatgaatcaacacaaagtgcttttcctgtttgaacatcttc 1769072  T
Q  201 aaaatcaatgatagtctttcttgtctatgaaaactacaaatttatatactacatatgaaactagtcttctttcttgtttaagcatctaaaactaataact 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1769073 aaaatcaatgatagtctttcttgtctatgaaaactgcaaatttatatactacatatgaaactagtcttctttcttgtttaagcatctaaaactaataact 1769172  T
Q  301 tttaccttgaaaattgtgaagttatgattttgatatgcttgacctctattttcaagataaatttcta-----gggttacttaaataatgcctcccttagg 395  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     |||||||||||| |||||| ||||||||    
T  1769173 tttacattgaaaattgtgaagttatgattttgatatgtttgacctctattttcaagataaatttctatttatgggttacttaaacaatgcc-cccttagg 1769271  T
Q  396 gctttttattttaaaaaatatgtttagcatctctattactccctctgt 443  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  1769272 gctttttattttaaaaaatatgtttagcatctctattactccatctgt 1769319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 1801554 - 1801734
Alignment:
Q  1 atgtcatcaaaggttgatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatg 100  Q
    ||||||| ||||||| ||  ||||  ||||||||||||| |||||| | |||  ||||| || ||||||||||||||| ||| |  | ||| || |||||    
T  1801554 atgtcatgaaaggttcataatattgtgaaattgaatgaatctcttgaacctggattggactgataccacaagcagccaagtcaatagttgtaacattatg 1801653  T
Q  101 accagctgattttagatcagttgcaaccttataccaacaccatgcaccatggatacctccatgaatcaacacaaagtgctt 181  Q
    ||||||| |||| ||   ||||||||||||||||||||||||||||||||||| | |||||||||  | ||||||||||||    
T  1801654 accagctaatttaagcatagttgcaaccttataccaacaccatgcaccatggaaagctccatgaacaagcacaaagtgctt 1801734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 1784744 - 1784925
Alignment:
Q  1 atgtcatcaaaggttgatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatg 100  Q
    |||||||||| |||| ||  ||||  ||||||||||||| |||||| |  ||  |||||||| ||||  ||||||||||||| |  | ||| || |||||    
T  1784744 atgtcatcaatggttcataatattttgaaattgaatgaatctcttgaacttgtattggattgatacctgaagcagccatgtcaatagttgtaacattatg 1784843  T
Q  101 accagctgattttagatcagttgcaaccttataccaacaccatgcaccatggatacctccatgaatcaacacaaagtgcttt 182  Q
    |||||||||||| ||   ||||||||||||||||||||||||| ||||||||  | |||||||||  | |||||||||||||    
T  1784844 accagctgatttaagcatagttgcaaccttataccaacaccattcaccatggccagctccatgaacaagcacaaagtgcttt 1784925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 1772544 - 1772718
Alignment:
Q  1 atgtcatcaaaggttgatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatg 100  Q
    |||||||||| |||| ||  ||||  ||||||||||||| |||||| |  ||  |||||||| ||||  |||||||||  || |  | ||| || |||||    
T  1772544 atgtcatcaagggttcataatattttgaaattgaatgaatctcttggacttgtattggattgatacctgaagcagccaattcaatagttgtaacattatg 1772643  T
Q  101 accagctgattttagatcagttgcaaccttataccaacaccatgcaccatggatacctccatgaatcaacacaaa 175  Q
    |||||||||||| ||   |||| | ||||||||||||||||||||||||||| | || |||||||||| ||||||    
T  1772644 accagctgatttaagcatagttaccaccttataccaacaccatgcaccatggcttccaccatgaatcagcacaaa 1772718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 1777541 - 1777690
Alignment:
Q  32 tgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgattttagatcagttgcaacctta 131  Q
    |||||||| |||||| | |||  ||||| || |||||||||||||||  || | ||  || || ||||||||||||||||| |     ||||||||||||    
T  1777541 tgaatgaatctcttgaacctgtattggactgataccacaagcagccaattcaattgtggtaacattatgaccagctgatttcaacatggttgcaacctta 1777640  T
Q  132 taccaacaccatgcaccatggatacctccatgaatcaacacaaagtgctt 181  Q
    |||||||||||||||||||||  | |||||||||  | ||||||||||||    
T  1777641 taccaacaccatgcaccatggccagctccatgaacaagcacaaagtgctt 1777690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 25727704 - 25727524
Alignment:
Q  1 atgtcatcaaaggttgatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccatgtctagtgctgtgactttatg 100  Q
    ||||||| ||||||| ||  ||||  ||||||||||||| |||||| | |||  ||||| || |||||||| ||||||  || |  | ||| || |||||    
T  25727704 atgtcataaaaggttcataatattgtgaaattgaatgaatctcttgaacctgtattggactgataccacaaccagccaattcaatagttgtaacattatg 25727605  T
Q  101 accagctgattttagatcagttgcaaccttataccaacaccatgcaccatggatacctccatgaatcaacacaaagtgctt 181  Q
    |||||||||||| ||   ||||||||||||||||||| ||||||||||||||| |  ||||||||  | ||||||||||||    
T  25727604 accagctgatttcagcatagttgcaaccttataccaagaccatgcaccatggaaaggtccatgaacaagcacaaagtgctt 25727524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 361
Target Start/End: Complemental strand, 35558962 - 35558883
Alignment:
Q  277 tttaagcatctaaaactaataacttttaccttgaaaattgtgaagttatgattttgatatgcttgacctctattttcaagataaa 361  Q
    ||||||||||||||| ||||||||||||| || ||||||     || |||||||| ||||| ||||| | |||||||||||||||    
T  35558962 tttaagcatctaaaattaataacttttacgttaaaaatt-----gtcatgatttttatatgtttgacttgtattttcaagataaa 35558883  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 6807571 - 6807634
Alignment:
Q  51 tgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgatttta 114  Q
    |||||||||| | | ||| |||||||||||||||||||||||||||  || ||||| |||||||    
T  6807571 tgctttggatggattccagaagcagccatgtctagtgctgtgacttcgtgtccagcagatttta 6807634  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 6814356 - 6814419
Alignment:
Q  51 tgctttggattggtaccacaagcagccatgtctagtgctgtgactttatgaccagctgatttta 114  Q
    |||||||||| | | ||| |||||||||||||||||||||||||||  || ||||| |||||||    
T  6814356 tgctttggatggattccagaagcagccatgtctagtgctgtgacttcgtgtccagcagatttta 6814419  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 8633778 - 8633832
Alignment:
Q  274 ttgtttaagcatctaaaactaa-taacttttaccttgaaaattgtgaagttatga 327  Q
    |||||||||||||||||| | | ||| ||||||||||||||||||| ||||||||    
T  8633778 ttgtttaagcatctaaaatttagtaagttttaccttgaaaattgtgtagttatga 8633832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 38902172 - 38902233
Alignment:
Q  274 ttgtttaagcatctaaaactaataacttttaccttgaaaattgtgaagttatgattttgatat 336  Q
    |||||||||||||||||| |||| |||||||| |||||||||||| | |||||| ||| ||||    
T  38902172 ttgtttaagcatctaaaaataat-acttttacattgaaaattgtgtaattatgacttttatat 38902233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 4552271 - 4552219
Alignment:
Q  274 ttgtttaagcatctaaaactaataacttttaccttgaaaattgtgaagttatg 326  Q
    |||||||||||||||||| || ||| | |||| |||||||||||| |||||||    
T  4552271 ttgtttaagcatctaaaaatagtaattattacgttgaaaattgtgtagttatg 4552219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 15064654 - 15064578
Alignment:
Q  280 aagcatctaaaactaataacttttaccttgaaaattgtgaagttatgatttt-gatatgcttgacctctattttcaa 355  Q
    |||||||||||| || |||||||||  |||||||||||| | ||||||||||  ||||| ||||| | |||||||||    
T  15064654 aagcatctaaaagtagtaacttttatattgaaaattgtgtatttatgattttacatatgtttgacttgtattttcaa 15064578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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