View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15344_high_11 (Length: 374)

Name: NF15344_high_11
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15344_high_11
NF15344_high_11
[»] chr7 (3 HSPs)
chr7 (17-303)||(44491179-44491466)
chr7 (98-143)||(5462970-5463015)
chr7 (98-142)||(27915601-27915645)
[»] chr2 (2 HSPs)
chr2 (81-154)||(43778477-43778550)
chr2 (45-130)||(42025680-42025765)
[»] chr4 (3 HSPs)
chr4 (98-148)||(52768315-52768365)
chr4 (113-154)||(1966628-1966669)
chr4 (113-154)||(19849512-19849553)
[»] chr8 (3 HSPs)
chr8 (45-141)||(41753002-41753098)
chr8 (107-148)||(20269602-20269643)
chr8 (107-148)||(21056231-21056272)
[»] chr5 (2 HSPs)
chr5 (113-154)||(1191549-1191590)
chr5 (113-154)||(4824948-4824989)
[»] chr3 (1 HSPs)
chr3 (113-154)||(36229003-36229044)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 44491466 - 44491179
Alignment:
Q  17 aaggaaaagaaattaaaaaattgtctagcctagctcaattgacaaatgtcgaaattatgaggctgaatgtcgtgacctgttttcgaaccaaagatttcac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| |||||||    
T  44491466 aaggaaaagaaattaaaaaattgtctagcctagctcaattgacaaatgtcgaaattgtgaggctaaatgtcgtgatctgttttcgaaccaaaaatttcac 44491367  T
Q  117 agttgtgtgtgagtttagtttcaatggcttacaacttcgaccnnnnnnnnnnnnnnnnnnnnnnnttgaatatgaggaaattcgttaccta-nnnnnnnn 215  Q
    || |||||||||||||||||||||||||||||||||||||||                       |||||||||||||||||| |||||||             
T  44491366 agctgtgtgtgagtttagtttcaatggcttacaacttcgaccaaaataaaaaagaaattaaaaaattgaatatgaggaaattcattacctattttttttt 44491267  T
Q  216 atgtctctcttcgaaaagaaccttaatccattcttaatgggggaattacacgataagaataagacagtacttgttgggtgagtgtagg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44491266 atgtctctcttcgaaaagaaccttaatccattcttaatgggggaattacacgataagaataagacagtacttgttgggtgagtgtagg 44491179  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 5463015 - 5462970
Alignment:
Q  98 ttcgaaccaaagatttcacagttgtgtgtgagtttagtttcaatgg 143  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  5463015 ttcgaacctgagatctcacagttgtgtgtgagtttaatttcaatgg 5462970  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 27915645 - 27915601
Alignment:
Q  98 ttcgaaccaaagatttcacagttgtgtgtgagtttagtttcaatg 142  Q
    |||||||| ||||| |||||||||||| |||||||| ||||||||    
T  27915645 ttcgaacctaagatctcacagttgtgtatgagtttaatttcaatg 27915601  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 43778550 - 43778477
Alignment:
Q  81 gaatgtcgtgacctgttttcgaaccaaagatttcacagttgtgtgtgagtttagtttcaatggcttacaacttc 154  Q
    |||||||||||||||  |||||||| |||| |||||||||||||||||||||| ||||| ||| |||| |||||    
T  43778550 gaatgtcgtgacctgggttcgaacctaagacttcacagttgtgtgtgagtttattttcattggattaccacttc 43778477  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 42025680 - 42025765
Alignment:
Q  45 cctagctcaattgacaaatgtcgaaattatgaggctgaatgtcgtgacctgttttcgaaccaaagatttcacagttgtgtgtgagt 130  Q
    |||||||||| ||||||||||||||||| | |||| | |||||||||||||  |||||||| |  |  ||||| ||||||||||||    
T  42025680 cctagctcaactgacaaatgtcgaaattttaaggccggatgtcgtgacctgagttcgaacccagaacctcacaattgtgtgtgagt 42025765  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 52768365 - 52768315
Alignment:
Q  98 ttcgaaccaaagatttcacagttgtgtgtgagtttagtttcaatggcttac 148  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||| ||||    
T  52768365 ttcgaaccaaggatctcacagttgtgtgtgagtttaatttcaatggattac 52768315  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 1966628 - 1966669
Alignment:
Q  113 tcacagttgtgtgtgagtttagtttcaatggcttacaacttc 154  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||    
T  1966628 tcacagttgtgtgtgagtttaatttcagtggattacaacttc 1966669  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 19849553 - 19849512
Alignment:
Q  113 tcacagttgtgtgtgagtttagtttcaatggcttacaacttc 154  Q
    ||||||||||||||||||||| ||||||||| |||| |||||    
T  19849553 tcacagttgtgtgtgagtttattttcaatggtttaccacttc 19849512  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 41753098 - 41753002
Alignment:
Q  45 cctagctcaattgacaaatgtcgaaattatgaggctgaatgtcgtgacctgttttcgaaccaaagatttcacagttgtgtgtgagtttagtttcaat 141  Q
    |||||||||| |||||||||||||||||   || | | ||||||||| | |  |||||||| || || |||||||||||||| |||||| |||||||    
T  41753098 cctagctcaactgacaaatgtcgaaattgcaagaccggatgtcgtgatccgaattcgaacccaaaatctcacagttgtgtgtaagtttaatttcaat 41753002  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 20269602 - 20269643
Alignment:
Q  107 aagatttcacagttgtgtgtgagtttagtttcaatggcttac 148  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||    
T  20269602 aagatctcacagttgtgtgtgagtttattttcaatggattac 20269643  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 21056231 - 21056272
Alignment:
Q  107 aagatttcacagttgtgtgtgagtttagtttcaatggcttac 148  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||    
T  21056231 aagatctcacagttgtgtgtgagtttattttcaatggattac 21056272  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 1191590 - 1191549
Alignment:
Q  113 tcacagttgtgtgtgagtttagtttcaatggcttacaacttc 154  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||    
T  1191590 tcacaattgtgtgtgagtttaatttcagtggcttacaacttc 1191549  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 4824989 - 4824948
Alignment:
Q  113 tcacagttgtgtgtgagtttagtttcaatggcttacaacttc 154  Q
    ||||||||||||||||||||| ||||||||| |||| |||||    
T  4824989 tcacagttgtgtgtgagtttattttcaatggattaccacttc 4824948  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 36229044 - 36229003
Alignment:
Q  113 tcacagttgtgtgtgagtttagtttcaatggcttacaacttc 154  Q
    ||||||||||||||||||||| ||||||||| |||| |||||    
T  36229044 tcacagttgtgtgtgagtttattttcaatggattaccacttc 36229003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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