View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_high_13 (Length: 363)
Name: NF15344_high_13
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 33554146 - 33554488
Alignment:
| Q |
18 |
atatctcaccgacgaatgtcccatc---actgtcaacaattgcaacagaagtttgttgtgcaagcgactttgagatggcttcaacagcggaagacgcagg |
114 |
Q |
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| T |
33554146 |
atatctcaccgacgaatgtcccatcatcactgtcaacaattgcaacagaagtttgttgtgcaagcgactttgagatggcttcaacagcggaagacgcagg |
33554245 |
T |
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| Q |
115 |
ggaatagtaatcgattgcgagcacatcggggctgatgatatcgagagaatcaatggagtatgcagggagtggagtgaagaggccaatggaaccaagcaag |
214 |
Q |
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| T |
33554246 |
ggaatagtaatcgattgcgagcacatcggggctgatgatatcgagagaatcaatggagtatgcagggagtggagtgaagaggccaatggaaccaagcaag |
33554345 |
T |
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| Q |
215 |
aacctgatcacatcctcttgtgttaaccaacagaattcaacaccgttgtggttgttgattgttgatgacttttgttgctgttttctccttgaaattccac |
314 |
Q |
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| T |
33554346 |
aacctgatcacatcctcttgtgttaaccaacagaattcaacaccgttgtggttgttgattgttgatgacttttgttgctgttttctccttgaaattccac |
33554445 |
T |
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| Q |
315 |
ctctttttgtttgcaaaattggcaccacaagattctgtgctcc |
357 |
Q |
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| T |
33554446 |
ctctttttgtttgcaaaattggcaccacaagattctgtgctcc |
33554488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 33540928 - 33541264
Alignment:
| Q |
18 |
atatctcaccgacgaatgtcccatcactgtcaacaattgcaacagaagtttgttgtgcaagcgactttgagatggcttcaacagcggaagacgcagggga |
117 |
Q |
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| T |
33540928 |
atatctcaccgatgaatgtcccatcaccgtcgacaattgcgacagaagtttgttgtgtgagggactttgagatggcttcaacagcagaagatgccgggga |
33541027 |
T |
|
| Q |
118 |
atagtaatcgattgcgagcacatcggggctgatgatatcgagagaatcaatggagtatgcagggagtggagtgaagaggccaatggaaccaagcaagaac |
217 |
Q |
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| T |
33541028 |
agagtaatcaatggagagcacatccgagctgataatattgagacgatcgatggattgtgcagggagtgcactgaagcggccaatggaaccaagcaagaac |
33541127 |
T |
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| Q |
218 |
ctgatcacatcctcttgtgttaaccaacagaattcaacaccgttgtggttgttgattgttgatgacttttgttgctgttttctccttgaaattccacctc |
317 |
Q |
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| T |
33541128 |
ctgatcacatcctcttgtgttaaccagcagaactcaacaccattgtggctgttgattgttaatgacttctgctgcagttttctccttgaaaggccacctt |
33541227 |
T |
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| Q |
318 |
tttttgtttgcaaaattggcaccacaagattctgtgc |
354 |
Q |
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| T |
33541228 |
tttttgtctgcgaaattggcaccacaagattttgtgc |
33541264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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