View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15344_high_18 (Length: 275)

Name: NF15344_high_18
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15344_high_18
NF15344_high_18
[»] chr2 (3 HSPs)
chr2 (10-261)||(2015257-2015508)
chr2 (20-108)||(11845093-11845181)
chr2 (20-108)||(11849822-11849910)
[»] chr3 (6 HSPs)
chr3 (22-261)||(40568228-40568467)
chr3 (10-261)||(40579286-40579537)
chr3 (10-261)||(40572829-40573080)
chr3 (19-261)||(40597616-40597858)
chr3 (32-261)||(40601784-40602013)
chr3 (19-246)||(40591149-40591376)
[»] chr4 (3 HSPs)
chr4 (20-101)||(13765720-13765800)
chr4 (52-129)||(14155044-14155120)
chr4 (26-108)||(14153489-14153568)
[»] chr1 (5 HSPs)
chr1 (41-129)||(1868401-1868489)
chr1 (42-102)||(9161976-9162036)
chr1 (26-102)||(9229754-9229830)
chr1 (41-102)||(1842819-1842880)
chr1 (42-90)||(9156064-9156112)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 2015257 - 2015508
Alignment:
Q  10 agtagcatagggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagc 109  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015257 agtaccattgggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagc 2015356  T
Q  110 acaatcacttcattgatgaacggatcaatctggttagggtcactgattttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaa 209  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015357 acaatcacttcattgatgaacggctcaatctggttagggtcactgattttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaa 2015456  T
Q  210 ctgttccctgacctccttggcctagaatcttgccttcgtcgaagttgttggt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015457 ctgttccctgacctccttggcctagaatcttgccttcgtcgaagttgttggt 2015508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 11845181 - 11845093
Alignment:
Q  20 ggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaag 108  Q
    ||||||||||| |||||||| || |||| ||||||||| |||||||| || || | ||| ||||||||||||| |||||||||||||||    
T  11845181 ggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaag 11845093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 11849910 - 11849822
Alignment:
Q  20 ggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaag 108  Q
    ||||||||||| |||||||| || |||| ||||||||| |||||||| || || | ||| ||||||||||||| |||||||||||||||    
T  11849910 ggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaag 11849822  T

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Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 40568467 - 40568228
Alignment:
Q  22 aatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcacttca 121  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||    
T  40568467 aatgaattcataaacaagcaagggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgggaaagaacgaccacttca 40568368  T
Q  122 ttgatgaacggatcaatctggttagggtcactgattttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaactgttccctgac 221  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||| || || |||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  40568367 ttgatgaacggctcaatctggtttgggtcactgactttggacttttttattgctacaattcttttattttgtaaaactcctttgtaaacagttccctgac 40568268  T
Q  222 ctccttggcctagaatcttgccttcgtcgaagttgttggt 261  Q
    | ||||||||||| ||||| ||||| || ||||| |||||    
T  40568267 caccttggcctaggatcttaccttcatcaaagttattggt 40568228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 40579537 - 40579286
Alignment:
Q  10 agtagcatagggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagc 109  Q
    |||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| |||||     
T  40579537 agtaccattgggaataaattcgtaaacaagtaacggaacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttgggaaaga 40579438  T
Q  110 acaatcacttcattgatgaacggatcaatctggttagggtcactgattttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaa 209  Q
    |  | |||||||||||||||||  ||||||||||| |||||||| ||||||||||| || || ||||||||||| |||||||||||||||||||||||||    
T  40579437 atgaccacttcattgatgaacgactcaatctggttcgggtcacttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaa 40579338  T
Q  210 ctgttccctgacctccttggcctagaatcttgccttcgtcgaagttgttggt 261  Q
    |  |||||||||| ||||||||||| ||| ||||||| ||||||||||||||    
T  40579337 caattccctgaccaccttggcctaggatcgtgccttcatcgaagttgttggt 40579286  T

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Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 261
Target Start/End: Complemental strand, 40573080 - 40572829
Alignment:
Q  10 agtagcatagggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagc 109  Q
    |||| ||| |||||| ||||| || |||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||     
T  40573080 agtaccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagt 40572981  T
Q  110 acaatcacttcattgatgaacggatcaatctggttagggtcactgattttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaa 209  Q
    || | |||||||||||||||||  |||| |||||| |||||||| ||||||||||| || || ||||||||||| |||| ||||||||||||||||||||    
T  40572980 acgaccacttcattgatgaacgactcaacctggttcgggtcacttattttggacttttttattgctacaattctgttattttgtaaaactcctttgtaaa 40572881  T
Q  210 ctgttccctgacctccttggcctagaatcttgccttcgtcgaagttgttggt 261  Q
    |  |||| ||||| ||||||||||| ||||||||||  ||||||||||||||    
T  40572880 caattccttgaccaccttggcctaggatcttgccttgatcgaagttgttggt 40572829  T

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Target: chr3; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 40597858 - 40597616
Alignment:
Q  19 gggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcact 118  Q
    |||||| ||||| |||||||| || ||||||||||| |||||||||||||| |  || ||||||||||| |||||||||||||| ||||||||   ||||    
T  40597858 gggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcctatggttgatttgggaaagcacggccact 40597759  T
Q  119 tcattgatgaacggatcaatctggttagggtcactgattttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaactgttccct 218  Q
    |||||||||||||  ||||||||||| |||||||||||||| |||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||    
T  40597758 tcattgatgaacgactcaatctggtttgggtcactgatttttgacttctttattgctacaatacttttatcttctaaaactcctttgtaaactgttccct 40597659  T
Q  219 gacctccttggcctagaatcttgccttcgtcgaagttgttggt 261  Q
    |||| ||||||||||| || |||||||| | ||||||| ||||    
T  40597658 gaccaccttggcctaggattttgccttcattgaagttgctggt 40597616  T

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Target: chr3; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 32 - 261
Target Start/End: Complemental strand, 40602013 - 40601784
Alignment:
Q  32 taaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcacttcattgatgaacg 131  Q
    |||||||| || ||||||||||| |||||||| |||||||| |||| |||||||||||||||||||||||| ||||| |  |||||||||||||||||||    
T  40602013 taaacaagcaatggaacttctgtttctaaacagcaacccaaaagctgtaccacatttctatggttgatttgagaaagaatgatcacttcattgatgaacg 40601914  T
Q  132 gatcaatctggttagggtcactgattttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaactgttccctgacctccttggcc 231  Q
    | |||||||||||  ||||||||||| ||||||| || || || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  40601913 gctcaatctggttttggtcactgattgtggacttttttattgcgacaattctgttatcttgtaaaactcctttgtaaactgttccctgaccaccttggcc 40601814  T
Q  232 tagaatcttgccttcgtcgaagttgttggt 261  Q
    ||| ||| ||| ||| | ||||||||||||    
T  40601813 taggatcctgctttcattgaagttgttggt 40601784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 40591376 - 40591149
Alignment:
Q  19 gggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcact 118  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||| ||||| || | ||||    
T  40591376 gggaatgaattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaacgaccact 40591277  T
Q  119 tcattgatgaacggatcaatctggttagggtcactgattttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaactgttccct 218  Q
    ||||||||||| || |||||||||||  ||||| ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||    
T  40591276 tcattgatgaatggctcaatctggttttggtcattgattttggacttttttattgctacaatacttttatcttgtaaaactcctttgtaaactgttccct 40591177  T
Q  219 gacctccttggcctagaatcttgccttc 246  Q
    ||   |||| |||||||||||| |||||    
T  40591176 gagaacctttgcctagaatctttccttc 40591149  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 13765720 - 13765800
Alignment:
Q  20 ggaatgaattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgattt 101  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||| ||| |  |||||||||||| || |||||||||    
T  13765720 ggaataaattcgtaaagaagtaagggaacttctgtctctaaacaacaactcaaaaaatttaccacattt-tacggttgattt 13765800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 14155120 - 14155044
Alignment:
Q  52 tgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcacttcattgatgaa 129  Q
    ||||||||| |||||||| || |||||||||||||||||||| |||||||| ||||| |||| || ||||||||||||    
T  14155120 tgtctctaagcaacaaccaaa-agctttaccacatttctatgattgatttgggaaagaacaaccatttcattgatgaa 14155044  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 14153489 - 14153568
Alignment:
Q  26 aattcgtaaacaagtaaaggaacttctgtctct-aaacaacaacccaagagctttaccacatttctatggttgatttgtgaaag 108  Q
    ||||||||||||||    ||||||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||| |||||    
T  14153489 aattcgtaaacaag----ggaacttctgtctcttaaaaaacaacccaaaagatttaccacatttatatggttgatttgggaaag 14153568  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 1868489 - 1868401
Alignment:
Q  41 aaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcacttcattgatgaa 129  Q
    |||||||||||||||||||||||||| |||||||| || || ||||| ||||| || ||||| || || |||| ||| ||||| |||||    
T  1868489 aaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaaccacctcattaatgaa 1868401  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 9161976 - 9162036
Alignment:
Q  42 aaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttg 102  Q
    ||||||||||||||||||||||||| |||||||| || || ||||||||||| || |||||    
T  9161976 aaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttg 9162036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 9229754 - 9229830
Alignment:
Q  26 aattcgtaaacaagtaaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttg 102  Q
    ||||| ||||| ||||||||||||| |||||| |||||||| |||||||| || || ||||||||||| || |||||    
T  9229754 aattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttg 9229830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 1842880 - 1842819
Alignment:
Q  41 aaaggaacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttg 102  Q
    |||||||||||||||||||||||||| |||||||| || || ||||| ||||| || |||||    
T  1842880 aaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 1842819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 9156064 - 9156112
Alignment:
Q  42 aaggaacttctgtctctaaacaacaacccaagagctttaccacatttct 90  Q
    ||||||||||||||||||||||||| |||||||| || || ||||||||    
T  9156064 aaggaacttctgtctctaaacaacatcccaagagtttgacaacatttct 9156112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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