View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_high_4 (Length: 586)
Name: NF15344_high_4
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 13 - 570
Target Start/End: Complemental strand, 48071520 - 48070963
Alignment:
| Q |
13 |
gaaggtgagaattatggtttttaactagaaaatgtgtttttaagcatgtatgttaggtatggtaatggtattgactactgagaaaggtattgaatctatg |
112 |
Q |
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| T |
48071520 |
gaagttgagaattattgtatttaactagaaaatgtgtttttaagcatgtatgttaggtatggtaatggtattgactactgagaaaggtattgaatctatg |
48071421 |
T |
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| Q |
113 |
agataattggaatgatatgtaatctgtatggagaaatatatgaatggaaaggaattgaatgaccagatacttggaatgatcacannnnnnnnnattacaa |
212 |
Q |
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| T |
48071420 |
agataattggaatgatatgtaatctgtatggagaaatatatgaatggaaaggaattgaatgaccagatacttggaatgatcacatttttttttattacaa |
48071321 |
T |
|
| Q |
213 |
ttatcacatatttctatatgtgatgatagtagttctttaagtagtgagctaattcatgtgtattagatactgttaaatgcgagattttgaaagtgagctt |
312 |
Q |
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| T |
48071320 |
ttatcacatatttctttatgtgatgatagtagttctttaagtagtgagctaattcatgtgtattagatactgttaaatgtgagattttgaaagtgagctt |
48071221 |
T |
|
| Q |
313 |
catatatatgagatttcagtgcacgcttgcattggcgtgggattgtcaaaaccatggtaagtcaccgcgattttgacaaaagttttagagattcaacaaa |
412 |
Q |
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| T |
48071220 |
catatatatgagatttcagtgcacgcttgcattggcgtgggattgtcaaaaccatggtaagtcaccgcgattttgacaaaagttttagagattcaacaaa |
48071121 |
T |
|
| Q |
413 |
atcaatgtgttactgtgattttgtcaaacttattgccaattcaaacatacacttagccatataactgtgacaatcaatcgctatatttttggccatgtcc |
512 |
Q |
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| T |
48071120 |
atcaatgtgttattgcgattttgtcaaacttattgccaattcaaacatacacttagccatataactgtgacaatcaatcgctatatttttggccatgtcc |
48071021 |
T |
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| Q |
513 |
tgtaataatcttttgaaaagaactcaacatcacttnnnnnnngaatagtacctgttat |
570 |
Q |
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| T |
48071020 |
tgtaataatcttttgaaaagaactcaacatcacttaaaaaaagaatagtacctgttat |
48070963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 442
Target Start/End: Original strand, 32218173 - 32218220
Alignment:
| Q |
395 |
ttttagagattcaacaaaatcaatgtgttactgtgattttgtcaaact |
442 |
Q |
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| T |
32218173 |
ttttggagtttcaacaaaatcaaagtgttactgtgattttgtcaaact |
32218220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Original strand, 7414758 - 7414801
Alignment:
| Q |
404 |
ttcaacaaaatcaatgtgttactgtgattttgtcaaacttattg |
447 |
Q |
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| T |
7414758 |
ttcaacaaaatcagagtgttactgtgattttgtcaaactcattg |
7414801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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