View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_high_5 (Length: 581)
Name: NF15344_high_5
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 83 - 581
Target Start/End: Original strand, 11367259 - 11367757
Alignment:
| Q |
83 |
tgggcggtgtcaacagtgagaggaggtaagttgggtagtgcgaagctacatggggagggagtgggtaagaggtcaggcctccatagcatggccttatcgg |
182 |
Q |
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| T |
11367259 |
tgggcggtgtcaacagtgagaggagggaagttgggtagtgcgaagctacatggggagggagtgggtaagaggtcaggcctccatagcatggccttatcgg |
11367358 |
T |
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| Q |
183 |
ttcaccaactttccggttatggtgacacactcgaggagtaataaagtgattcgtaaaggaataacgttggtttggaatgcgaccttatgggtgttatgga |
282 |
Q |
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| T |
11367359 |
ttcaccaactttccggttatggtgacacactcgaggagtaataaagtgattcgtaaaggaataacgttggtttggaatgcgaccttatgggtgttatgga |
11367458 |
T |
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| Q |
283 |
atgtgagaaatggtaaaatctttgagactaaagattgtgcacaggaagaagtgatcgagaaaataaaagtggtgtcttggaagtggttccttagtagaat |
382 |
Q |
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| T |
11367459 |
atgtgagaaatggtaaaatctttgagactaaagattgtgcacaggaagaagtgatcgagaaaataaaagtggtgtcttggaagtggttccttagtagaat |
11367558 |
T |
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| Q |
383 |
ggcgaagagctcttgtttataatatgaatggtggtggaacccaattatgtgctttgccttacgatgtgtttgcaggcggtctgttttggtggtctagaat |
482 |
Q |
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| T |
11367559 |
ggcgaagagctcttgtttataatatgaatggtggtggaacccaattatgtgctttgccttacgatgtgtttgcaggcggtctgttttggtggtctagaat |
11367658 |
T |
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| Q |
483 |
tggaatgcgtggtttggtggtggcatacctggtctgttttggacctctggtttggtattaggtttctcacctgggagtctttatacgtctccttctttt |
581 |
Q |
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| T |
11367659 |
cggaatgcgcggtttggtggtggcatacctggtctgttttggacctctggtttggtattagttttctcacctgggagtctttatacgtctccttctttt |
11367757 |
T |
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