View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_1 (Length: 836)
Name: NF15344_low_1
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 142 - 661
Target Start/End: Complemental strand, 24053098 - 24052579
Alignment:
| Q |
142 |
tgaggaagaaatatatatctcctttttccaatcaagtttttataatcactttcaatttcactattttcttgaaattaacataggatcgatacatctttca |
241 |
Q |
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| T |
24053098 |
tgagaaagaaatatatatctccttttttcaatcaagtttttataatcactttcaatttcactattttcttgaaattaacataggattgatacatctttca |
24052999 |
T |
|
| Q |
242 |
ggtattttgatatgatggctgaggaaaccttttatttgaacatcaacaaaaaatttactcaattgcaagtgagcacttccacttctcctctccgttcaat |
341 |
Q |
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| T |
24052998 |
ggtactttgatctgatggctaaggaaaccttttatttgaacatcaataaaaaatttactcaattgcaagtgagtacttccacttctcctctccgttcaat |
24052899 |
T |
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| Q |
342 |
ttttcttcttctactaccaaccatatacatggaattgtttaaatcattcnnnnnnntaatgttttaaacagttacagtaattttagtacttatatacttt |
441 |
Q |
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| T |
24052898 |
ttttcttcttctactaccaaccatatacatggaattgtttaaatcattcaaaaaaataatgttttaaacagttacagtaattttagtacttatatacttt |
24052799 |
T |
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| Q |
442 |
ttgtacaattgaaattgtacattcttcattttagacaaataatctgtatcaatactttatatttactgttttcttactaaactgttaaaatgacaggaag |
541 |
Q |
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| T |
24052798 |
ttgtactattgaaattgtacattgttcattttagacaaatcatctgtatcaatactttatatttactgttttcttactaaactgttaaaatgataggaag |
24052699 |
T |
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| Q |
542 |
agtattcaaaagtggacccaaccgattcaattaaaagactcataccacaaaagtaggttatccttaccattttactacatagtgtatacgaagggctggt |
641 |
Q |
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| T |
24052698 |
agtattcaaaagtggacccaacttattcaattaaaagactcataccacaaaagtaggttatccttaccattttactacatagtgtatacgaagggctggt |
24052599 |
T |
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| Q |
642 |
aaactatgcatatcattctc |
661 |
Q |
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| T |
24052598 |
aaactatgcatatcattctc |
24052579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 742 - 820
Target Start/End: Complemental strand, 24052515 - 24052437
Alignment:
| Q |
742 |
taaaagtgacatatagatatgagagggattatcgtttcttgaggaatgccacattgagataacaaaaataggaagaaat |
820 |
Q |
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| T |
24052515 |
taaaagtgacatatagatatgagagggattatcgtttcttgaggaatgccacagcgagataacaaaaataggaagaaat |
24052437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 24053182 - 24053100
Alignment:
| Q |
10 |
agatgaaaatagtcagaacataacaagaaagataacaagagagagaggcgcactacaacaaat---gaacatccacatcgatcaa |
91 |
Q |
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| T |
24053182 |
agatgaaaatagccagaacataacaagaaagataac--gagagagaggctcactacaacaaataaagaacatccacatcgatcaa |
24053100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 14367733 - 14367934
Alignment:
| Q |
10 |
agatgaaaatagtcagaacataacaagaaagata-acaaga-gagagaggcgcactacaacaaatgaacatccacatcgatcaattgttccctttatgca |
107 |
Q |
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|||||||||||||| |||||||| |||||||||| | || | |||||||| ||| |||| || |||||||||||| ||||||||||||||||| |||| |
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| T |
14367733 |
agatgaaaatagtcggaacataaaaagaaagatacataacaagagagaggtgca--acaaataaagaacatccacattgatcaattgttccctttttgca |
14367830 |
T |
|
| Q |
108 |
catttgatgacaaacaactttgagacaaagcatctgaggaagaaatatatatctcctttttccaatcaagtttttataatcactttcaatttcactattt |
207 |
Q |
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| T |
14367831 |
catttgatgacaaacaactttgagacaaagcaagtgaggaagaactatatatctccttttttcaatcaagtttttatgatcactttcaatttcactattt |
14367930 |
T |
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| Q |
208 |
tctt |
211 |
Q |
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|||| |
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| T |
14367931 |
tctt |
14367934 |
T |
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Back To:
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