View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_10 (Length: 486)
Name: NF15344_low_10
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Original strand, 39027616 - 39027985
Alignment:
| Q |
17 |
aacatgtcaccaagttggccagatttttccacacaccnnnnnnncattatgccaacatccatttcaaccaataacattgtcaccacaaataattaccaga |
116 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39027616 |
aacatgtcaccaagttggccagatttttccacacagcaaaaaaacattatgccaacatccatttcaaccaataacattgtcaccacaaataattaccaga |
39027715 |
T |
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| Q |
117 |
atcaaaacccttcatgggtggatgagttcctcgacttttcctcggcaaggcgaggcgctcatagaaggtcggtcagcgattcagtcacattcttagaaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39027716 |
atcaaaacccttcatgggtggatgagttcctcgacttttcctcggcaaggcgaggcgctcatagaaggtcggtcagcgattcagtcacattcttagaaac |
39027815 |
T |
|
| Q |
217 |
accaatgctcgatggaaaacacgatggtaacaacaatgacaacgagttcgacaagtttgatgatgaacaatttttgtccatgttcagtgatgaaatatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39027816 |
accaatgctcgatggaaaacacgatggtaacaacaatgacaacgagttcgacaagtttgatgatgaacaatttttgtccatgttcagtgatgaaatatct |
39027915 |
T |
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| Q |
317 |
ggtgtcaataacatgccaccaacattgtcttcgtcgaacccttcgagtccttcagatcagaattttgtca |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39027916 |
ggtgtcaataacatgccaccaacattgtcttcgtcgaacccttcgagtccttcagatcagaattttgtca |
39027985 |
T |
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