View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15344_low_11 (Length: 477)
Name: NF15344_low_11
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_11 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 26355426 - 26355850
Alignment:
| Q |
18 |
gaccagataatcaaggtgccacaatatttgaaccaacaggtatacctcaaggattctctatgttgggtagctacagccaacctaacaacaaacctctttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
26355426 |
gaccagataatcaaggtgccacaatatttgaaccaacaggtatacctcaaggattctctatgttgggttgctacagccaacctaacaacaaacctctttt |
26355525 |
T |
|
| Q |
118 |
tggatatgttcttgtggcaaaggatgtttcttcaagtactactaatagcactttaaagaaaccaattgattatacacttgtattgaacacatcaactatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26355526 |
tggatatgttcttgtggcaaaggatgtttcttcaagtactactaatagcactttaaagaaaccaattgattatacacttgtattgaacacatcaactatt |
26355625 |
T |
|
| Q |
218 |
aaggttaatcaagataccacatgttatatttggttaccaatagcacctgatggttacaaagctttaggccatgttgtcaccacaacacaagataaacctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
26355626 |
aaggttaatcaagataccacatgttatatttggttaccaatagcacctgatggttacaaagctttaggccatgttgtcaccgcaacacaagataaacctt |
26355725 |
T |
|
| Q |
318 |
cccttgacaaaatcatgtgtgtcagatcagacctcacagaccaatgcgagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
26355726 |
cccttgacaaaatcatgtgtgtcagatcagacctcacagaccaatgcgagtcttcttcgtggatctggggatcaaacgacttcaatttttatgatgttag |
26355825 |
T |
|
| Q |
418 |
accaatcaatagaggtactcaagct |
442 |
Q |
| |
|
||| ||||||||||| ||||||||| |
|
|
| T |
26355826 |
accgatcaatagaggaactcaagct |
26355850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 46 - 465
Target Start/End: Complemental strand, 26348974 - 26348555
Alignment:
| Q |
46 |
tgaaccaacaggtatacctcaaggattctctatgttgggtagctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaaggatgtt |
145 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
26348974 |
tgaaccaacaggaatacctaaaggattctctatgttaggtagctacagccaaccaaacaataagcctctttttggatatgtttttgtagcaaaggatgtt |
26348875 |
T |
|
| Q |
146 |
tcttcaagtactactaatagcactttaaagaaaccaattgattatacacttgtattgaacacatcaactattaaggttaatcaagataccacatgttata |
245 |
Q |
| |
|
||||||||||| || ||| |||||||| |||| ||||||| |||||||||| |||||| || | | |||| || ||||||| |||| ||||| |
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|
| T |
26348874 |
tcttcaagtaccacaggtagaactttaaaaccaccagttgattacacacttgtatcgaacaccgcatccttcaaggctactcaagattccactctttata |
26348775 |
T |
|
| Q |
246 |
tttggttaccaatagcacctgatggttacaaagctttaggccatgttgtcaccacaacacaagataaaccttcccttgacaaaatcatgtgtgtcagatc |
345 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
26348774 |
tttggttaccaatagcacctaatggatacaaagctttaggacatgttgtcaccacaacacaagataaaccttcacttgacaaaatcatgtgtgtcagatc |
26348675 |
T |
|
| Q |
346 |
agacctcacagaccaatgcgagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgct |
445 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| ||||||||| || |
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|
| T |
26348674 |
agacctcacagaccaatgtgagtcttcttcgtggatttggggatcaaacaacttcaatttctacaatgttagaccaatcaatagaggaactcaagctcct |
26348575 |
T |
|
| Q |
446 |
agtgttcgtgtcggcacctt |
465 |
Q |
| |
|
||||||| ||||| ||||| |
|
|
| T |
26348574 |
ggtgttcgagtcggtacctt |
26348555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 74 - 465
Target Start/End: Complemental strand, 26333713 - 26333322
Alignment:
| Q |
74 |
tctatgttgggtagctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaaggatgtttcttcaagtactactaatagcactttaa |
173 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||| ||||||||| |
|
|
| T |
26333713 |
tctatgttaggcagctacagccaacccaacaacaaacctctttttggatatgttcttgcagcaaaggatatttcaggaagtaccactaatggcactttaa |
26333614 |
T |
|
| Q |
174 |
agaaaccaattgattatacacttgtattgaacacatcaactattaaggttaatcaagataccacatgttatatttggttaccaatagcacctgatggtta |
273 |
Q |
| |
|
|| |||| ||||||| ||| | |||| ||||| || | | | |||| ||||||| || | | |||||||||||||| |||||||||||||| || |
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|
| T |
26333613 |
agccaccagttgattacacattagtatcaaacaccgcatccgtcatggttgatcaagactcccctttgtatatttggttaccgatagcacctgatggcta |
26333514 |
T |
|
| Q |
274 |
caaagctttaggccatgttgtcaccacaacacaagataaaccttcccttgacaaaatcatgtgtgtcagatcagacctcacagaccaatgcgagtcttct |
373 |
Q |
| |
|
| | ||| |||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||||||| || ||||| ||||||||| |
|
|
| T |
26333513 |
ccatgctgtaggccatgttgtcaccacaacacaagacaaaccttcccccgacaaagtcatgtgtgtcagagcagacctcactgagcaatgtgagtcttct |
26333414 |
T |
|
| Q |
374 |
tcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttcgtgtcggcacctt |
465 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| || || ||||||||||| |||||||| | | ||||| | ||||||| || |||||||| |
|
|
| T |
26333413 |
acatggatttggggatcaaacgacttaaatttctacgacgttagaccaattaatagaggaagtaaagctcccggtgttcgcgttggcacctt |
26333322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 68 - 432
Target Start/End: Complemental strand, 26339037 - 26338676
Alignment:
| Q |
68 |
ggattctctatgttgggtagctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaaggatgtttcttcaagtactactaatagca |
167 |
Q |
| |
|
|||| ||||||||| || || ||||||||||| |||| ||| ||||||||||| ||||||||||| ||||||||| |||| | | | |||||| ||| |
|
|
| T |
26339037 |
ggatactctatgttaggcagttacagccaacccaacagcaagcctctttttggttatgttcttgtagcaaaggatatttc---aggaaagactaatggca |
26338941 |
T |
|
| Q |
168 |
ctttaaagaaaccaattgattatacacttgtattgaacacatcaactattaaggttaatcaagataccacatgttatatttggttaccaatagcacctga |
267 |
Q |
| |
|
|||||||| ||| ||||||| |||| ||||||||||| || | || | ||||| |||||| | | | ||||| ||| |||||||||||||| | |
|
|
| T |
26338940 |
ctttaaagccacctgttgattactcactagtattgaacactgcatccatcacggttactcaagactcttctttgtatatctggctaccaatagcacctaa |
26338841 |
T |
|
| Q |
268 |
tggttacaaagctttaggccatgttgtcaccacaacacaagataaaccttcccttgacaaaatcatgtgtgtcagatcagacctcacagaccaatgcgag |
367 |
Q |
| |
|
||| ||| | ||| |||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || |
|
|
| T |
26338840 |
tggctaccatgctgtaggccatgttgtcaccaaaacacaagataaaccttccaccaacaaagtcatgtgtgtcagatcagacctcacagagcaatgtgaa |
26338741 |
T |
|
| Q |
368 |
tcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagagg |
432 |
Q |
| |
|
|| ||| | | ||||||||||||||||| ||| ||||| || |||||||||||||| |||||||| |
|
|
| T |
26338740 |
tcgtctacattgatttggggatcaaacggcttaaatttctacgatgttagaccaattaatagagg |
26338676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 240 - 354
Target Start/End: Complemental strand, 26325645 - 26325531
Alignment:
| Q |
240 |
gttatatttggttaccaatagcacctgatggttacaaagctttaggccatgttgtcaccacaacacaagataaaccttcccttgacaaaatcatgtgtgt |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| | | ||||||||||| || || | ||||| || ||||| || ||||||||||||||||| |
|
|
| T |
26325645 |
gttatatttggttaccaatagcacctgatggctacaaagttgttggccatgttgttactacttcccaagagaagccttcactagacaaaatcatgtgtgt |
26325546 |
T |
|
| Q |
340 |
cagatcagacctcac |
354 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26325545 |
tagatcagacctcac |
26325531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 387
Target Start/End: Complemental strand, 28316069 - 28315922
Alignment:
| Q |
240 |
gttatatttggttaccaatagcacctgatggttacaaagctttaggccatgttgtcaccacaacacaagataaaccttcccttgacaaaatcatgtgtgt |
339 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| | ||||||| ||| ||||||| || |||| || |||||||| ||||| | |||| ||||| |
|
|
| T |
28316069 |
gttacatttggttaccaatagcacctaatggttatagccctttagggcatattgtcacaaccacacctgaaaaaccttcacttgatagaatccaatgtgt |
28315970 |
T |
|
| Q |
340 |
cagatcagacctcacagaccaatgcgagtcttcttcgtggatttgggg |
387 |
Q |
| |
|
|||||||| ||||| || ||||| ||| | ||| ||||||||||| |
|
|
| T |
28315969 |
gagatcagatctcactgatcaatgtgagattaattcatggatttgggg |
28315922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 28315893 - 28315839
Alignment:
| Q |
398 |
ttcaatttttatgatgttagaccaatcaatagaggtactcaagctgctagtgttc |
452 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
28315893 |
ttcaatgttcattatgttagaccaatcaatagaggtattgaagctcctagtgttc |
28315839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 47 - 442
Target Start/End: Original strand, 54948512 - 54948907
Alignment:
| Q |
47 |
gaaccaacaggtatacctcaaggattctctatgttgggtagctacagccaacctaacaacaaacctctttttggatatgttcttgtggcaaaggatgttt |
146 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
54948512 |
gaaccaacaggaatacctcaaggattctctatgttaggcagctacagccaacccaacaacaaacctctttttgggtatgttcttgtagcaaaagatgttt |
54948611 |
T |
|
| Q |
147 |
cttcaagtactactaatagcactttaaagaaaccaattgattatacacttgtattgaacacatcaa--ctattaaggttaatcaagataccacatgttat |
244 |
Q |
| |
|
||||||| || || || ||||| |||||| |||||||||||| ||| |||||||||| | | || ||||| || | | ||||| | | ||| |
|
|
| T |
54948612 |
cttcaagcaccacaaaaagcacattaaagccaccaattgattacacatttgtattgaaagc-taaatcctattcagct-actcaagtcttgcctttgtat |
54948709 |
T |
|
| Q |
245 |
atttggttaccaatagcacctgatggttacaaagctttaggccatgttgtcaccacaacacaagataaaccttcccttgacaaaatcatgtgtgtcagat |
344 |
Q |
| |
|
|||||| ||||| |||||||| |||| ||| |||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
54948710 |
atttggctaccagtagcacctaatggctaccgtgctttaggccatgttgtcaccaaaacacgagacaaacctccccttgacaaaatcatgtgtgttagat |
54948809 |
T |
|
| Q |
345 |
cagacctcacagaccaatgcgagtcttcttcgtggatttggggatcaaacgacttcaatttttatgatgttagaccaatcaatagaggtactcaagct |
442 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||||||| ||| | ||||||||||| ||||| ||||||||||| | |||||| ||||||||| |
|
|
| T |
54948810 |
cagacctcacagagaaatgcgaaacttcttcgttgatttgggaatccgaagacttcaatttctatgacgttagaccaataagtagaggaactcaagct |
54948907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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