View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15344_low_12 (Length: 473)
Name: NF15344_low_12
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_12 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 10213715 - 10213261
Alignment:
| Q |
1 |
tacgatgaagtgtactatgttctttaaaaaagttaaattaatcaccttcttatggaatgaagagtactatctcgttttatatttcattggtatttttaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
10213715 |
tacgatgaagtgtactatgttctttaaaaaagttaaattgatcaccttcttatgcaatgaagagtactatctcgttttatatttcattggtatttttgaa |
10213616 |
T |
|
| Q |
101 |
tgaattatgttaaacctaataactgtttatagtgcctgcataacctgttgaccagggtcagtacactatgataaactctcattgtcttcaacaaaattct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10213615 |
tgaattatgttaaacctaataactgtttatagtgcatgcataaccggttgaccagtgtcagtacactatgataaactctcattgtcttcaacaaaattct |
10213516 |
T |
|
| Q |
201 |
tttgtactctatagccatggtagattttgatcaagaaaatgtcgagctttggaaagacttagttaaaacaaaagacggaatatatcgtttagctcaatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
10213515 |
tttgtactctatagccatggtagattttgatcaagaaaatgtcgagctttggaaagacttagttaaaacaaaagaccgaatatatcgtttagctcaatac |
10213416 |
T |
|
| Q |
301 |
agctcagcggttggaaggtgagttcttattcaacactgtttcgtttatttgccatgatttttaatcaagtgatatgattaatatttttaaaaagatactt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
10213415 |
agctcagcggttggaaggtgagttcttattcaacactgtttcgtgtatttgccaggatttttaatcaagtgatctgattaatatttttaaaaagatactt |
10213316 |
T |
|
| Q |
401 |
atctttgtccttttcaggttgcgagtgcactgggtgaccgggggctttgctttat |
455 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10213315 |
atctttgtccttttcgggttgcgagtgcactgggtgaccgggggctttgctttat |
10213261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 9676110 - 9675892
Alignment:
| Q |
5 |
atgaagtgtactatgttctttaaaaaagttaaattaatcaccttcttatggaatgaagagtactatctcgttttatatttcattggtatttttaaatgaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
9676110 |
atgaagtgtactatgttctttaaaaaagttaaatta----ccttcttatgcaatgaagagtactatctcgttttatgtttcattggtatttttgaaggaa |
9676015 |
T |
|
| Q |
105 |
ttatgttaaacctaataactgtttatagtgcctgcataacctgttgaccagggtcagtacactatgataaactctcattgtcttcaacaaaattcttttg |
204 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||| | ||||||||||||||| |||||| || |
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|
| T |
9676014 |
ttttgttaaacctaataactgtttatagtgcatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctg |
9675916 |
T |
|
| Q |
205 |
tactctatagccatggtagatttt |
228 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
9675915 |
tattctatagccatggtagatttt |
9675892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 9684439 - 9684129
Alignment:
| Q |
20 |
ttctttaaaaaagttaaattaatcaccttcttatggaatgaagagtactatctcgttttatatttcattggtatttttaaatgaattatgttaaacctaa |
119 |
Q |
| |
|
|||||| |||||||||||| |||||||||| ||| ||||||||||||||||| |||| || ||||| |||||||||| ||| || ||||| | || || |
|
|
| T |
9684439 |
ttctttgaaaaagttaaatcgatcaccttctcatgcaatgaagagtactatcttgtttgatttttcaatggtatttttgaataaagtatgtatagcccaa |
9684340 |
T |
|
| Q |
120 |
taactgtttatagtgcctgcataacctgttgaccagggtcagtacactatgataaactctcattgtcttcaacaaaattcttttgtactctatagccatg |
219 |
Q |
| |
|
|||||||| |||| ||||||| ||||||| | || ||||||||| ||||| ||| |||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
9684339 |
---ctgtttattgtgcatgcataatttgttgacttgcgtaagtacactaagataaggcctctttgtcttcaacaggattcttttgtatgctatagccatg |
9684243 |
T |
|
| Q |
220 |
gtagattttgatcaagaaaatgtcgagctttggaaagacttagttaaaacaaaagacggaatatatcgtttagctcaatacagctcagcggttggaaggt |
319 |
Q |
| |
|
|||||||||||||||||||||| | | |||| ||||| ||| | ||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9684242 |
gtagattttgatcaagaaaatggtggggtttgtaaagatttactgaaaacaaaagatggaatagatcgtttagctcaatacagctcatcggttggaaggt |
9684143 |
T |
|
| Q |
320 |
gagttcttattcaa |
333 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9684142 |
gagttcttattcaa |
9684129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 127 - 322
Target Start/End: Original strand, 13855399 - 13855594
Alignment:
| Q |
127 |
ttatagtgcctgcataacctgttgaccagggtcagtacactatgataaactctcattgtcttcaacaaaattcttttgtactctatagccatggtagatt |
226 |
Q |
| |
|
||||||||| || |||||| ||||||||| |||||||||||| |||||| ||||||||||||||||| |||||| |||| |||||| |||||||||||| |
|
|
| T |
13855399 |
ttatagtgcatgtataaccagttgaccagtgtcagtacactaagataaattctcattgtcttcaacatgattcttctgtattctatatccatggtagatt |
13855498 |
T |
|
| Q |
227 |
ttgatcaagaaaatgtcgagctttggaaagacttagttaaaacaaaagacggaatatatcgtttagctcaatacagctcagcggttggaaggtgag |
322 |
Q |
| |
|
||||||||||||||| | || |||| ||||||||| |||| ||||||||| ||||| |||||||||||| || ||||||| ||||||||||||||| |
|
|
| T |
13855499 |
ttgatcaagaaaatggcaaggtttgtaaagacttacttaacacaaaagacagaataaatcgtttagctcgatgcagctcatcggttggaaggtgag |
13855594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 124 - 332
Target Start/End: Complemental strand, 10211414 - 10211206
Alignment:
| Q |
124 |
tgtttatagtgcctgcataacctgttgaccagggtcagtacactatgataaactctcattgtcttcaacaaaattcttttgtactctatagccatggtag |
223 |
Q |
| |
|
||||||||||| |||||| | |||||||| | |||||||||||| | |||| ||| ||||||||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
10211414 |
tgtttatagtgtatgcatagcttgttgacctgcgtcagtacactaaggtaaagcctctttgtcttcaacaagattcttttgtatactatagccatggttg |
10211315 |
T |
|
| Q |
224 |
attttgatcaagaaaatgtcgagctttggaaagacttagttaaaacaaaagacggaatatatcgtttagctcaatacagctcagcggttggaaggtgagt |
323 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||| | ||| ||||||||| |
|
|
| T |
10211314 |
attttgatcaagaaaatgatgaggtttggaaagacttacttaaaacaaaagaaggaatagatcgtttagctcaatgcagctcatctgttagaaggtgagc |
10211215 |
T |
|
| Q |
324 |
tcttattca |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
10211214 |
tcttattca |
10211206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 332
Target Start/End: Complemental strand, 12105807 - 12105506
Alignment:
| Q |
5 |
atgaagtgtactatgttctttaaaaaagttaaattaatcaccttcttatggaatgaagagtactatctcgttttatatttcattggtatttttaaatgaa |
104 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||| ||||||||||| || |||||||||||||||||| ||| || |||| |||||||| || ||| |
|
|
| T |
12105807 |
atgaagtgttctatgctctttgaaaaagttaaattgatcaccttcttgtgcaatgaagagtactatctcatttcatctttcgttggtattcttgaat--- |
12105711 |
T |
|
| Q |
105 |
ttatgttaaacctaataactgtttatagtgcctgcataacctgttgaccagggtcagtacactatgataaactctcattgtcttcaacaaaattcttttg |
204 |
Q |
| |
|
||||||| ||||||| ||||||| | |||||||| |||||||||||| ||||| ||||||||||||||| |||| || |
|
|
| T |
12105710 |
----------------aactgtt-atagtgcatgcataagcagttgaccaacgtcagtacactaaaataaagtctcattgtcttcaa------tcttctg |
12105634 |
T |
|
| Q |
205 |
tactctatagccatggtagattttgatcaagaaaatgtcgagctttggaaagacttagttaaaacaaaagacggaatatatcgtttagctcaatacagct |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||| |||| | |||| || |||| |||||| || ||||| ||||||| ||||||| |||| |
|
|
| T |
12105633 |
tattctatagccatggtagattttgatcaagaaaatggagaggtttgtagagacataattaacacaaaaaactgaatagatcgtttctctcaataaagct |
12105534 |
T |
|
| Q |
305 |
cagcggttggaaggtgagttcttattca |
332 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
12105533 |
cagctcttggaaggtgagttcttattca |
12105506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 284 - 413
Target Start/End: Complemental strand, 9675890 - 9675761
Alignment:
| Q |
284 |
atcgtttagctcaatacagctcagcggttggaaggtgagttcttattcaacactgtttcgtttatttgccatgatttttaatcaagtga-tatgattaat |
382 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |||||||||||| || ||||||| | |||||||| |||||| ||||||||||| |||| ||||| |
|
|
| T |
9675890 |
atcgtttagctcaatacagctcagctgttgaaaggcgagttcttattc-acgctgtttcatgtatttgccctgatttgtaatcaagtgattatggttaat |
9675792 |
T |
|
| Q |
383 |
atttttaaaaagatacttatctttgtccttt |
413 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |
|
|
| T |
9675791 |
atttttcaaaagatacttatctttgttcttt |
9675761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 10102442 - 10102541
Alignment:
| Q |
5 |
atgaagtgtactatgttctttaaaa-aagttaaattaatcaccttcttatggaatgaagagtactatctcgttttatatttcattggtatttttaaatga |
103 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
10102442 |
atgaattgtactatgttctttaaaaaaagttaaactgatcaccttcttgtgcaatgaagagtactatctcgtttcatatttcattggtattttttaatga |
10102541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 190
Target Start/End: Complemental strand, 9677600 - 9677479
Alignment:
| Q |
68 |
tatctcgttttatatttcattggtatttttaaatgaattatgttaaacctaataactgtttatagtgcctgcataacctgttgaccagggtcagtacact |
167 |
Q |
| |
|
|||||| ||| || ||||||||||||| || |||||| |||| ||||| ||||||||||| ||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
9677600 |
tatctcatttcatctttcattggtattcttgaatgaagtatgctaaacttaataactgtt-atagtgcatgcataaccagttgaccagcatcagtacact |
9677502 |
T |
|
| Q |
168 |
atgataaactctcattgtcttca |
190 |
Q |
| |
|
| |||||| || ||||||||||| |
|
|
| T |
9677501 |
aagataaagtcacattgtcttca |
9677479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 413
Target Start/End: Complemental strand, 9677474 - 9677368
Alignment:
| Q |
310 |
gttggaaggtgagttcttattcaacactgtttcgtttatttgccatgatttttaatcaagtgat----atgattaatatttttaaaaagatacttatctt |
405 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||||| | |||||| |||||||| |||||||||| ||| ||||| ||||| |||||||||||||||| |
|
|
| T |
9677474 |
gttggaaggtgagttcttactca-cacggtttcacatttttgccttgattttttatcaagtgatgattatggttaatgtttttcaaaagatacttatctt |
9677376 |
T |
|
| Q |
406 |
tgtccttt |
413 |
Q |
| |
|
|||||||| |
|
|
| T |
9677375 |
tgtccttt |
9677368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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