View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_13 (Length: 448)
Name: NF15344_low_13
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 131 - 429
Target Start/End: Complemental strand, 16976362 - 16976064
Alignment:
| Q |
131 |
gcaagagccaccgaaacaaacaatgcacatgagattgattctggagtgggaatcatttcaaatctcaaatatgttgtatatgaaagcatctgtatggata |
230 |
Q |
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| T |
16976362 |
gcaagagccaccgaaacaaacaatgcacatgagattgattctggagtgggaatcatttcaaatctcaaatatgttgtatatgaaagcatctgtatggata |
16976263 |
T |
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| Q |
231 |
ataatagaaattattctgatgtggtttttcggcatacttttaacaataataaaattgaaatgaaatgaaaaaacctagacaaatggtttcgtggtgtagc |
330 |
Q |
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| T |
16976262 |
ataatagaaattattctgatgtggtttttcggcatacttttaacaataataaaattgaaatgaaatgaaaaaacctagacaaatggtttcgtggtgtagc |
16976163 |
T |
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| Q |
331 |
agacatgagtgttatctataaatcctttttgttttgtttaagaaaccaaacaataattaattagattcctcagtataaaatacaatgcaatctcttaat |
429 |
Q |
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| T |
16976162 |
agacatgagtgttatctataaatcctttttgttttgtttaagaaaccaaacaataattaattagattcctcagtacaaaattcaatgcaatctcttaat |
16976064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 16976606 - 16976461
Alignment:
| Q |
11 |
tgagatgaactgaaaaatatatttaacctaatatccttctcttcgatgaaactgtgccatggagaaaaagtaattaggttttggaagaagatgaaatctg |
110 |
Q |
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| T |
16976606 |
tgagatgaactgaaaaatatatttaacctaatatccttctcttcgatgaaactgtgccatggagaaaaagtaattaggttttggaagaagatgaaatctg |
16976507 |
T |
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| Q |
111 |
atagaacacgctggaacaacgcaagagccaccgaaacaaacaatgc |
156 |
Q |
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| T |
16976506 |
atagaacacgctggaacaacgcaagagccaccgaaacaaacaatgc |
16976461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 18669283 - 18669230
Alignment:
| Q |
172 |
tggagtgggaatcatttcaaatctcaaatatgttgtatatgaaagcatctgtatg |
226 |
Q |
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| T |
18669283 |
tggagtgggaa-cattccaaagctcaaatatgttgtatatgaaagcatctttatg |
18669230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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