View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_14 (Length: 448)
Name: NF15344_low_14
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 35171106 - 35170653
Alignment:
| Q |
1 |
atgttaaagcctaaaggtaatcatgattgatccactcatgaaccatattggtcaacagtttggggatttcaaaacaacaattaaacatgttttgctaaca |
100 |
Q |
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| T |
35171106 |
atgttaaagcctaaaggtaatcatgattgatccactcatgaaccatattggtcaacagtttggggatttcaaaacaacaattaaacatgttttgctaaca |
35171007 |
T |
|
| Q |
101 |
actaatgtcacatacataaattag-------------------tgtagctcggttagtagttaggtatcaatgatattatttgtaaaggttgaagtttaa |
181 |
Q |
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| T |
35171006 |
actaatgtcacatacataaataagacataataggttatgtaagtgtagctcggttagtagttaggtatcaatgatattatttgcaaaggttgaagtttaa |
35170907 |
T |
|
| Q |
182 |
accctgaattctccacgtgtgtgaattctaaccactacttgacaacaacaaaaagacattggatgatgttagacacgttgcatatgaaaatgtttaacct |
281 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35170906 |
accctaaattctccacgtgtgtgaattctagccactacttgacaacaa-aaaaagacattggatgatgttagacacgttgcatatgaaaatgtttaacct |
35170808 |
T |
|
| Q |
282 |
ttaaaaatatagggattaaaatgaaataagtcattttgttttttgcaaatgaggatgttgaccatttatttttgtgatgtccnnnnnnnggaacaatttg |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
35170807 |
ttaaaaatatagggattaaaatgaaataagtcattttgttttttgcaaatgaggatgttgaccatttatttttgttatgtcctttttttggaacaatttg |
35170708 |
T |
|
| Q |
382 |
gtctccggtttcgcaatgtttaggcttcatcacggtggatccgattcacatttca |
436 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
35170707 |
gtcttcggtttcgcaatgtttaggcttcgtcacggtggatccggttcacatttca |
35170653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 434
Target Start/End: Original strand, 14003946 - 14004053
Alignment:
| Q |
327 |
caaatgaggatgttgaccatttatttttgtgatgtccnnnnnnnggaacaatttggtctccggtttcgcaatgtttaggcttcatcacggtggatccgat |
426 |
Q |
| |
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|||||||||||||||||| ||| ||| |||||||||| |||||||||||||| ||||||| |||| |||| ||| |||||||| |||||| |
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| T |
14003946 |
caaatgaggatgttgaccttttgtttctgtgatgtccattttttttaacaatttggtctctggtttcggaatggttagactttgtcacggtgaatccgac |
14004045 |
T |
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| Q |
427 |
tcacattt |
434 |
Q |
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|||||||| |
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| T |
14004046 |
tcacattt |
14004053 |
T |
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