View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_16 (Length: 364)
Name: NF15344_low_16
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 3299670 - 3300026
Alignment:
| Q |
1 |
aaaacacatggagttgatatttcaaaaccaaaacagcagtctatctgcttacaaaatcatatagttatagttctaacaaaacacagaagtcaaagcataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3299670 |
aaaacacatggagttgatatttcaaaaccaaaacagcagtctatctgcttacaaaatcatatagttatagttctaacaaaacacagaagtcaaagcataa |
3299769 |
T |
|
| Q |
101 |
acacagaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaa |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3299770 |
acacggaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtgcagacttgacacttaatccgaaaaa |
3299869 |
T |
|
| Q |
201 |
caagttaacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgcacggttcac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3299870 |
caagttaacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgcacggttcac |
3299969 |
T |
|
| Q |
301 |
ttcttcttcaatgctgactttg-ttttattaagtcctccgctgggatccttcttctc |
356 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3299970 |
ttcttcttcaatgctgactttgtttttattaagtcctccgctgggatccttcttctc |
3300026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 356
Target Start/End: Complemental strand, 43067938 - 43067699
Alignment:
| Q |
120 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
219 |
Q |
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||||||||||||||| ||||||||||| || ||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| |||| | || |
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| T |
43067938 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagactagaa |
43067839 |
T |
|
| Q |
220 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcct---tggatagatcttcctgcacggttcacttcttcttcaatgctg |
316 |
Q |
| |
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||| || ||||| | | ||||||| ||||||| || || ||| ||||| | |||||||| |||||| |||||||||||||||||||||||| |
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| T |
43067838 |
atagaaatactaaggaccaaagaccatttattgtaataactatgatatgcttcccaagtagatagatcatcctgctcggttcacttcttcttcaatgctg |
43067739 |
T |
|
| Q |
317 |
actttgttttattaagtcctccgctgggatccttcttctc |
356 |
Q |
| |
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|||| || | ||||||||||| ||||||||||||||||| |
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| T |
43067738 |
acttggtctgcttaagtcctccactgggatccttcttctc |
43067699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 356
Target Start/End: Original strand, 43082869 - 43083136
Alignment:
| Q |
92 |
aaagcataaacacagaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
191 |
Q |
| |
|
|||||||||| ||| || ||| | ||| ||||||||||||||| ||||||||||| || ||||||||| | ||||||| ||||||||||||||||||| |
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|
| T |
43082869 |
aaagcataaaaacaaaacagatagagcgctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaa |
43082968 |
T |
|
| Q |
192 |
tccgaaaaacaagttaacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcc---ttggatagatcttcc |
288 |
Q |
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| T |
43082969 |
tatgaaaaacaagtaaactagacgagaaatagaaatactaaggacccaagaccatttattgtaataactatgatatgcttcccaagtagatagaccatcc |
43083068 |
T |
|
| Q |
289 |
tgcacggttcacttcttcttcaatgctgactttgttttattaagtcctccgctgggatccttcttctc |
356 |
Q |
| |
|
||| | |||||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||| |
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|
| T |
43083069 |
tgctcagttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctc |
43083136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 356
Target Start/End: Original strand, 43044025 - 43044292
Alignment:
| Q |
92 |
aaagcataaacacagaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
191 |
Q |
| |
|
|||||||||| ||| || ||| |||| ||||||||||||||| ||||||||||| || ||||| ||| | ||||||| ||||||||||||||||||| |
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|
| T |
43044025 |
aaagcataaaaacaaaacagatatagtactgccaccgtcgatctagaacccagttctgagaacacaagctaagagatgaaggtgcagacttgacacttaa |
43044124 |
T |
|
| Q |
192 |
tccgaaaaacaagttaacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttgg---atagatcttcc |
288 |
Q |
| |
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| ||||||||||| ||| ||| || ||||| || ||||| | | ||||||| ||||||| || || ||| ||||| | ||||||| ||| |
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| T |
43044125 |
tatgaaaaacaagtaaactagaagagaaatagaaatactaaggaccaaagaccatttattgtaataactatgatatgcttcccaagtaaatagatcatcc |
43044224 |
T |
|
| Q |
289 |
tgcacggttcacttcttcttcaatgctgactttgttttattaagtcctccgctgggatccttcttctc |
356 |
Q |
| |
|
||| |||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||| |
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|
| T |
43044225 |
tgctcggttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctc |
43044292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 43079958 - 43079856
Alignment:
| Q |
107 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
206 |
Q |
| |
|
|||||||| |||| |||||| |||||| |||||||| | ||||||||| | ||||||| ||| ||||||||||||||||||||| |||||||||||| |
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| T |
43079958 |
aaaagaaaaagccttgccacagtcgatatagaacccaatcctgggaacaagggctgcgagacgacggtgcagacttgacacttaatctgaaaaacaagtt |
43079859 |
T |
|
| Q |
207 |
aac |
209 |
Q |
| |
|
||| |
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|
| T |
43079858 |
aac |
43079856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 38139079 - 38139007
Alignment:
| Q |
119 |
cctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
191 |
Q |
| |
|
||||||||| || ||| |||| |||||| | |||||||||| || |||||||| ||||||||||||||||||| |
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|
| T |
38139079 |
cctgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa |
38139007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 43079802 - 43079762
Alignment:
| Q |
277 |
gatagatcttcctgcacggttcacttcttcttcaatgctga |
317 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||||||||| |
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|
| T |
43079802 |
gatagatcatcctgcacggttcccttattcttcaatgctga |
43079762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 4230525 - 4230618
Alignment:
| Q |
121 |
tgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagac |
214 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||| || |||||||| |||||||||| ||||||||||| |||||||| |||||||||| |
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|
| T |
4230525 |
tgccaccgtcgatctagaacccagttctgggaacaaaagctgggagatgacggtgcagacttcacacttaatccaaaaaacaacttaacaagac |
4230618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 19965709 - 19965623
Alignment:
| Q |
94 |
agcataaacacagaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagac |
180 |
Q |
| |
|
|||||||| || ||||||||| |||||||||| ||||||| |||| |||||| ||||||| |||| ||| ||| ||||||||||| |
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|
| T |
19965709 |
agcataaaaaccaaaaagaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctgcaagacaacagtgcagac |
19965623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 4618729 - 4618826
Alignment:
| Q |
107 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
206 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||| |||| | ||||||||| | || ||||||||||||||||||||||||| | | |||||||||| |
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|
| T |
4618729 |
aaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgcagacttgacacttaacctgcaaaacaagtt |
4618826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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