View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15344_low_18 (Length: 356)

Name: NF15344_low_18
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15344_low_18
NF15344_low_18
[»] chr5 (20 HSPs)
chr5 (11-341)||(9074483-9074813)
chr5 (23-341)||(8535514-8535838)
chr5 (27-341)||(1600073-1600376)
chr5 (17-340)||(8528960-8529280)
chr5 (23-253)||(8641475-8641717)
chr5 (27-258)||(2856663-2856897)
chr5 (27-258)||(2874273-2874507)
chr5 (23-273)||(8644296-8644546)
chr5 (27-258)||(2844836-2845070)
chr5 (183-273)||(8636951-8637041)
chr5 (194-256)||(2904941-2905003)
chr5 (183-253)||(8677918-8677988)
chr5 (27-96)||(2904779-2904848)
chr5 (134-269)||(8547992-8548121)
chr5 (23-83)||(8637141-8637201)
chr5 (132-169)||(9003648-9003685)
chr5 (26-106)||(8547878-8547958)
chr5 (301-341)||(8677818-8677858)
chr5 (31-83)||(8678088-8678140)
chr5 (134-167)||(2904881-2904914)
[»] chr7 (2 HSPs)
chr7 (17-341)||(48361615-48361942)
chr7 (27-264)||(35779921-35780146)
[»] chr4 (1 HSPs)
chr4 (23-340)||(9443121-9443435)
[»] chr1 (4 HSPs)
chr1 (176-271)||(26324195-26324290)
chr1 (23-105)||(5131022-5131104)
chr1 (296-339)||(5130822-5130865)
chr1 (132-163)||(5130964-5130995)
[»] scaffold0627 (2 HSPs)
scaffold0627 (132-268)||(4736-4872)
scaffold0627 (32-80)||(4948-4996)
[»] chr6 (2 HSPs)
chr6 (132-256)||(16716447-16716571)
chr6 (31-80)||(16716647-16716696)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 9074483 - 9074813
Alignment:
Q  11 atgaaagtcagtaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtgg 110  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074483 atgaaaatcagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtgg 9074582  T
Q  111 aattgttgataacagacatatcatgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074583 aattgttgataacagacatatcatgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaa 9074682  T
Q  211 tatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttattacatggagttcaggtttatggccgataa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9074683 tatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttattacatggggttcaggtttatggccgataa 9074782  T
Q  311 aacactttgaagaaggtgctgccatattgtt 341  Q
    |||||||||||||||||||||||||||||||    
T  9074783 aacactttgaagaaggtgctgccatattgtt 9074813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 341
Target Start/End: Complemental strand, 8535838 - 8535514
Alignment:
Q  23 aaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataa 122  Q
    |||||||||||||| ||||||| ||||||||||||| | || ||||||||||||||||||| ||  |||||||||| ||||||| |||| || ||  |||    
T  8535838 aaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcatttccttctcctccacagatgtttggaaatcataataatggatttcttagtaa 8535739  T
Q  123 cagacatat---catgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtatt 219  Q
     ||||||||   |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| |||||||||||||||||||||| |||    
T  8535738 tagacatattagcatgggagaattaaagggatttctttacatttgtgattcgacctttttatctgatgtttcaatgtgggttatgaatgaatatggcatt 8535639  T
Q  220 gaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttattacatggagttcaggttta---tggccgataaaacact 316  Q
    | |||||||||||||||  ||||||||||||||||||| |||||||||||||   ||| | || || |||| |  ||||||   ||||| ||||||||||    
T  8535638 ggagaatcatggactaagatttacaacattgatacttcattcaatccttcggaaagtcgtgttccacggagatatggtttaagctggccaataaaacact 8535539  T
Q  317 ttgaagaaggtgctgccatattgtt 341  Q
    |||||||||||||||||||||||||    
T  8535538 ttgaagaaggtgctgccatattgtt 8535514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 27 - 341
Target Start/End: Original strand, 1600073 - 1600376
Alignment:
Q  27 gtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataacaga 126  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||| |  || ||||||     
T  1600073 gtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatgagtttggaaatcataataatggaacttgtggtaacagc 1600172  T
Q  127 catat---catgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaag 223  Q
    ||| |   ||||||||||||||||||||||||||||||||||||||  || ||||||||||||||| || ||||||||||||| |||||||| |||||||    
T  1600173 catgttagcatgggagaattaaagggatttctttacatttgtgact--acctttttatctgatgttccaatgtgggttatgaaggaatatggcattgaag 1600270  T
Q  224 aatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttattacatggagttcaggtttatggccgataaaacactttgaaga 323  Q
    ||||||||||||| ||||||||    |||||||| ||||||||||            || ||||| |||| ||||||||||||||| |||||||||||||    
T  1600271 aatcatggactaaggtttacaagtacgatacttcattcaatcctt------------tttcatggtgttcgggtttatggccgatacaacactttgaaga 1600358  T
Q  324 aggtgctgccatattgtt 341  Q
    ||||||||||||||||||    
T  1600359 aggtgctgccatattgtt 1600376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 8529280 - 8528960
Alignment:
Q  17 gtcagtaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgt 116  Q
    ||||| |||||||||||||| ||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||  |    ||||    
T  8529280 gtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcataatgtttt--ttgt 8529183  T
Q  117 tgataacagacatatcatgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggt 216  Q
    ||    |  |  || |||||||||||||||||||||||| |||||||||||   ||| ||| ||||| |||||||| ||||||||||||||||||||||     
T  8529182 tgtaggcctat-tagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggc 8529084  T
Q  217 attgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttattacatggagttcaggttta---tggccgataaaac 313  Q
    |||| |||||||||||||||  |||||||||| ||||||||||||||||||| ||    || | || || || |||  ||||||   |||||||||||||    
T  8529083 attggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttgg---atcgtgttccacggggttatggtttaagctggccgataaaac 8528987  T
Q  314 actttgaagaaggtgctgccatattgt 340  Q
    |||||||||||||||||||||||||||    
T  8528986 actttgaagaaggtgctgccatattgt 8528960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 8641717 - 8641475
Alignment:
Q  23 aaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaacc---ataatagtggaattgttga 119  Q
    ||||||||||||| | ||||||||| ||||||||||| ||| ||| ||||||||||||||| |||||||||||||| |   |||||| |||||||  ||     
T  8641717 aaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcctccacatgtgtttggaaatcataataataatggaattcatgg 8641618  T
Q  120 taacagacatat---catgggagaattaaagggatttctttacattt------gtgactggacatttttatctgatgtttcagtgtgggttatgaatgaa 210  Q
    |||||| | |||   ||||||||| ||||||||||||| ||||||||      |||||| ||| ||||| | ||||||  ||||||||||||||||||||    
T  8641617 taacaggcttattagcatgggagagttaaagggatttccttacatttgtgatcgtgactcgacctttttctttgatgtcacagtgtgggttatgaatgaa 8641518  T
Q  211 tatggtattgaagaatcatggactaaagtttacaacattgata 253  Q
    ||||| |||| ||||||||||||||| | ||||||||||||||    
T  8641517 tatggcattggagaatcatggactaaggcttacaacattgata 8641475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 2856663 - 2856897
Alignment:
Q  27 gtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataacaga 126  Q
    ||||||||||| ||||  |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||| |||| ||    ||| ||      
T  2856663 gtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatg 2856762  T
Q  127 catatca---tgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaag 223  Q
    | ||| |   |||||||||| ||||||||||||||||||||| |  |  | | | |     ||||| || |||||||||||||||||||||| |||| ||    
T  2856763 cctattagattgggagaattgaagggatttctttacatttgtcatagatcgtctctcgagaatgttacaatgtgggttatgaatgaatatggcattggag 2856862  T
Q  224 aatcatggactaaagtttacaacattgatacttcg 258  Q
    ||||||||||||  |||||||||||||||||||||    
T  2856863 aatcatggactattgtttacaacattgatacttcg 2856897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 2874273 - 2874507
Alignment:
Q  27 gtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataacaga 126  Q
    ||||||||||| ||||  |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||| |||| ||    ||| ||      
T  2874273 gtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatg 2874372  T
Q  127 catatca---tgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaag 223  Q
    | ||| |   |||||||||| ||||||||||||||||||||| |  |  | | | |     ||||| || |||||||||||||||||||||| |||| ||    
T  2874373 cctattagattgggagaattgaagggatttctttacatttgtcatagatcgtctctcgagaatgttacaatgtgggttatgaatgaatatggcattggag 2874472  T
Q  224 aatcatggactaaagtttacaacattgatacttcg 258  Q
    ||||||||||||  |||||||||||||||||||||    
T  2874473 aatcatggactattgtttacaacattgatacttcg 2874507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 8644546 - 8644296
Alignment:
Q  23 aaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataa 122  Q
    ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||    ||||||  ||| || |||| |||| ||  |  |||    
T  8644546 aaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaa 8644450  T
Q  123 cagacatat---catgggagaattaaagggatttctttacatttgtgactggacatttttatc-tgatgtttcagtgtgggttatgaatgaatatggtat 218  Q
    |   | |||   |||||||||||||| |||||| ||||||||||| || |  | ||| || || ||||||| || |||||||||||||||||||||  ||    
T  8644449 cgagcgtattcgcatgggagaattaaggggattactttacatttgcga-tacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatgacat 8644351  T
Q  219 tgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggc 273  Q
    || ||||||||||||||| ||||||||||||||||||| | ||| ||||| ||||    
T  8644350 tggagaatcatggactaaggtttacaacattgatactttgatcagtcctttgggc 8644296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 2844836 - 2845070
Alignment:
Q  27 gtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataacaga 126  Q
    ||||||||||| ||||  |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||| |||| ||     || ||      
T  2844836 gtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccttagcatg 2844935  T
Q  127 catatca---tgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaag 223  Q
    | ||| |   |||||||||| ||||||||||||||||||||| |     | | | |     ||||| || |||||||||||||||||||||| |||| ||    
T  2844936 cctattagattgggagaattgaagggatttctttacatttgtcatatatcgtctcttgagaatgttacaatgtgggttatgaatgaatatggcattggag 2845035  T
Q  224 aatcatggactaaagtttacaacattgatacttcg 258  Q
    ||||||||||||  ||||||| |||||||||||||    
T  2845036 aatcatggactattgtttacagcattgatacttcg 2845070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 8637041 - 8636951
Alignment:
Q  183 tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggc 273  Q
    ||||||| || |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||| | ||| ||||| ||||    
T  8637041 tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaacatcgatactttggtcagtcctttgggc 8636951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 2904941 - 2905003
Alignment:
Q  194 tgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatactt 256  Q
    |||||||||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  2904941 tgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatactt 2905003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 8677988 - 8677918
Alignment:
Q  183 tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgata 253  Q
    ||||||| || |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||    
T  8677988 tgatgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaaggtttacaacattgata 8677918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 2904779 - 2904848
Alignment:
Q  27 gtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttgga 96  Q
    ||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||    
T  2904779 gtcaatattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctccacatatgtttgga 2904848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 269
Target Start/End: Original strand, 8547992 - 8548121
Alignment:
Q  134 tgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggac 233  Q
    |||||||||||||||||| ||||||||||||||||||||  | | | ||| ||||| || ||||||||||||| ||||||||      ||| ||||||||    
T  8547992 tgggagaattaaagggatgtctttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaatatgg------agagtcatggac 8548085  T
Q  234 taaagtttacaacattgatacttcgttcaatccttc 269  Q
    |||  ||||| |||||||||||| |  |||||||||    
T  8548086 taagatttaccacattgatactttgaccaatccttc 8548121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 8637201 - 8637141
Alignment:
Q  23 aaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctcc 83  Q
    ||||||| ||||||| ||||||||| |||| |||||||||||| |||||||||||||||||    
T  8637201 aaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcatttccttctcctcc 8637141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 9003685 - 9003648
Alignment:
Q  132 catgggagaattaaagggatttctttacatttgtgact 169  Q
    |||||||||||||| |||||||||||||||||||||||    
T  9003685 catgggagaattaaggggatttctttacatttgtgact 9003648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 8547878 - 8547958
Alignment:
Q  26 ggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataata 106  Q
    |||| ||||||| ||| ||||||||||| |||||||| || ||||||||||||||| |   |||||||| ||| |||||||    
T  8547878 ggtctatattgtgtttttgttttgaaagagagaggtttcaatcatttccttctccttcatctgtgtttgaaaatcataata 8547958  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 8677858 - 8677818
Alignment:
Q  301 tggccgataaaacactttgaagaaggtgctgccatattgtt 341  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  8677858 tggccggtaaaacactttgaagagggtgctgccatattgtt 8677818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 8678140 - 8678088
Alignment:
Q  31 atattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctcc 83  Q
    ||||||| ||||||||| |||| ||||| |||||| |||||||||||||||||    
T  8678140 atattgtgtttctgtttagaaactgagaagttgcaatcatttccttctcctcc 8678088  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 2904881 - 2904914
Alignment:
Q  134 tgggagaattaaagggatttctttacatttgtga 167  Q
    |||||||||| |||||||||||||||||||||||    
T  2904881 tgggagaattgaagggatttctttacatttgtga 2904914  T

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Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 48361615 - 48361942
Alignment:
Q  17 gtcagtaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgt 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |    
T  48361615 gtcagcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcctccacatgtgtttggaaatcataataatggaattct 48361714  T
Q  117 tgataacagacatat---catgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatat 213  Q
    || |||||| |||||   |||||||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||| ||||||||||||||||||||    
T  48361715 tggtaacaggcatattagcatgggagaattaaagggatttctttacatttgtgactcgacctttgcatctgatgtttcaatgtgggttatgaatgaatat 48361814  T
Q  214 ggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttattacatggagttcaggtttatggccgataaaac 313  Q
    |||||||||||||||| |||||| |||||||||||  ||||| |||||||||||||| || || ||  | | |||  ||||| |||||||||||||||||    
T  48361815 ggtattgaagaatcatagactaaggtttacaacatcaatactgcgttcaatccttcgagcagttttgcttcttggcattcagctttatggccgataaaac 48361914  T
Q  314 actttgaagaaggtgctgccatattgtt 341  Q
    ||||||||||||||||||||||||||||    
T  48361915 actttgaagaaggtgctgccatattgtt 48361942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 27 - 264
Target Start/End: Complemental strand, 35780146 - 35779921
Alignment:
Q  27 gtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataacaga 126  Q
    ||||||||| | ||| ||||||||| |||||||||||||| |||||||||||||||| |||||||||||||  ||| |||            |||   |     
T  35780146 gtcaatattatgtttttgttttgaaggtgagaggttgcagccatttccttctcctccacatgtgtttggaattcatgata------------ataggcgt 35780059  T
Q  127 catatcatgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaat 226  Q
      || |||||||||||||||||||||||||||||||||||||| ||  |||||   ||||||| || ||||||||||||||||  |||| ||||||||||    
T  35780058 attagcatgggagaattaaagggatttctttacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaagaat 35779959  T
Q  227 catggactaaagtttacaacattgatacttcgttcaat 264  Q
    | |||||||| |||||||||||||| |||||| |||||    
T  35779958 cgtggactaaggtttacaacattgagacttcggtcaat 35779921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 340
Target Start/End: Complemental strand, 9443435 - 9443121
Alignment:
Q  23 aaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttgataa 122  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||    || ||| ||     
T  9443435 aaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataat-gt----ttattg-tag 9443342  T
Q  123 cagacatat---catgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtatt 219  Q
     || | |||   |||||||||||||||||||||||| |||||||||||   ||| ||| ||||| |||||||| |||||||||||||||||||||| |||    
T  9443341 taggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcatt 9443242  T
Q  220 gaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttattacatggagttcaggttta---tggccgataaaacact 316  Q
    | |||||||||||||||  |||||||||| ||||||||||||||||||| ||    || | || || || |||  ||||||   ||||||||||||||||    
T  9443241 ggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttgg---atcgtgttccacggggttatggtttaagctggccgataaaacact 9443145  T
Q  317 ttgaagaaggtgctgccatattgt 340  Q
    ||||||||||||||||||||||||    
T  9443144 ttgaagaaggtgctgccatattgt 9443121  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 26324195 - 26324290
Alignment:
Q  176 ttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgg 271  Q
    ||||||||||||||||| |||||||||||||||||||||| | || |||||||||||||||  |||||||||| ||| ||||||||||||||||||    
T  26324195 ttttatctgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaacatcgatgcttcgttcaatccttcgg 26324290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 5131104 - 5131022
Alignment:
Q  23 aaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataat 105  Q
    |||||||| | |||| |||| |||||||||||||||| ||||| ||||| ||||||||||| || ||||||| ||| ||||||    
T  5131104 aaaggtcattgttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatcataat 5131022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 5130865 - 5130822
Alignment:
Q  296 gtttatggccgataaaacactttgaagaaggtgctgccatattg 339  Q
    |||| |||||| |||||||||||||||| |||||||||||||||    
T  5130865 gtttttggccggtaaaacactttgaagagggtgctgccatattg 5130822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 5130995 - 5130964
Alignment:
Q  132 catgggagaattaaagggatttctttacattt 163  Q
    ||||||||||||||||||||||||||||||||    
T  5130995 catgggagaattaaagggatttctttacattt 5130964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 268
Target Start/End: Complemental strand, 4872 - 4736
Alignment:
Q  132 catgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatgg 231  Q
    ||||||||||||||||||||||||||||||||||||||  |  |  |||    ||||| || |||||||||||||||||||||| ||||  |||||||||    
T  4872 catgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaatcatgg 4773  T
Q  232 actaaagtttacaacattgatacttcgttcaatcctt 268  Q
    ||||| |||||| ||||| |||||| || ||||||||    
T  4772 actaaggtttaccacattaatactttgtacaatcctt 4736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 4996 - 4948
Alignment:
Q  32 tattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcc 80  Q
    |||||| ||| |||||||| |||||||||||||| |||||||| |||||    
T  4996 tattgtgtttttgttttgacagtgagaggttgcaatcatttccctctcc 4948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 16716571 - 16716447
Alignment:
Q  132 catgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatgg 231  Q
    |||||||||||||||||||||||| ||||||| |||||  |  || ||     ||||| || |||||||||||||||||||||| |||| ||||||||||    
T  16716571 catgggagaattaaagggatttctatacatttctgactcaaacttcttcgaatatgttacaatgtgggttatgaatgaatatggcattggagaatcatgg 16716472  T
Q  232 actaaagtttacaacattgatactt 256  Q
    ||||| |||||| ||||||||||||    
T  16716471 actaaggtttaccacattgatactt 16716447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 16716696 - 16716647
Alignment:
Q  31 atattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcc 80  Q
    ||||||| ||| |||||||||||||||| |||||| ||||||||||||||    
T  16716696 atattgtgtttttgttttgaaagtgagaagttgcattcatttccttctcc 16716647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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