View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_19 (Length: 348)
Name: NF15344_low_19
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 26099154 - 26099467
Alignment:
| Q |
19 |
gtgagaatcttgacaaaggaaacaacattgtagccatcgtcgttttcggcaggaacctctggaggagtttcttgttcatggccatggccttccgttacgg |
118 |
Q |
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| T |
26099154 |
gtgagaatcttgacaaaggaaacaacattgtaaccatcgtcgtcttcggcaggaacctccggaggagcttcttgttcgtggccatggccatccattacgg |
26099253 |
T |
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| Q |
119 |
gagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatggaaggaggataacaatgaag |
218 |
Q |
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| T |
26099254 |
gagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatggaaggaggataacaatgaag |
26099353 |
T |
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| Q |
219 |
aagggtgatgattgtgtgagttgagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgactgaggctccgaca |
318 |
Q |
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| T |
26099354 |
aagggtgatgattgtgtgaggggagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtagcttcggaatcttgactgaggctccgaca |
26099453 |
T |
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| Q |
319 |
catttctgccagat |
332 |
Q |
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|||||||||||||| |
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| T |
26099454 |
catttctgccagat |
26099467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 25224863 - 25224814
Alignment:
| Q |
256 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
305 |
Q |
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| T |
25224863 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25224814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 25289019 - 25288970
Alignment:
| Q |
256 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
305 |
Q |
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| T |
25289019 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25288970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 25225016 - 25224928
Alignment:
| Q |
112 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
200 |
Q |
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| T |
25225016 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25224928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 25289172 - 25289084
Alignment:
| Q |
112 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
200 |
Q |
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| T |
25289172 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25289084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 25728232 - 25728320
Alignment:
| Q |
112 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
200 |
Q |
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| T |
25728232 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25728320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 25728385 - 25728434
Alignment:
| Q |
256 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
305 |
Q |
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| T |
25728385 |
tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac |
25728434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 25222582 - 25222655
Alignment:
| Q |
118 |
ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca |
191 |
Q |
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| T |
25222582 |
ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca |
25222655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 25286738 - 25286811
Alignment:
| Q |
118 |
ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca |
191 |
Q |
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| T |
25286738 |
ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca |
25286811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 25618132 - 25618044
Alignment:
| Q |
112 |
gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
200 |
Q |
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||||||||||||||||| |||||||| || |||||||| | || ||||||| |||||||||| |||| ||||||||||| | |||||| |
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| T |
25618132 |
gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatgga |
25618044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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