View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15344_low_2 (Length: 703)
Name: NF15344_low_2
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 578; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 25 - 686
Target Start/End: Original strand, 24716343 - 24717005
Alignment:
| Q |
25 |
ggtgaggggggtgaatatcaaggctctgaacttggggcagagagtagcctaaaatagacagggcgagattattgattttgacggctctcttctttgaatc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24716343 |
ggtgaggggggtgaatatcaaggctctgaacttggggcaaagagttgcctaaaatagacagggcgagattattgattttgaccgctctcttctttgaatc |
24716442 |
T |
|
| Q |
125 |
tcgatcnnnnnnn-ttgggggaaagtattttagaaagctcgtggacgatgaaaattggtatttgattctcaaacaaggcaagatcagacaagacatcatc |
223 |
Q |
| |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24716443 |
tcgctcaaaaaaaattgggggaaagtattttagaaagctcgtggacgatgaaaattggtattcgattctcaaacaaggcaagatcagacaagacatcatc |
24716542 |
T |
|
| Q |
224 |
gttttttagcacttgaggtgcgaaaagacaaggagtaaagttcaattgacttgatagttgagaatcaagttcgagttctttcgtgatgagaagctctagc |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24716543 |
gttttttagcacttgaggtgcgaaaagacaaggagtaaagttcaattgacttgatagttgagaatcaagttcgagttcttttgtgatgagaagctctagc |
24716642 |
T |
|
| Q |
324 |
agaaaacaaccatccactagcataattttcacgagttcgtatacttcaaggctgatgtcctccacgtaacttgctcgaatctgatcatttatatcccaaa |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24716643 |
agaaaacaaccatccactagcataattttcacgagttcgtatacttcaaggctgatgtcctccacgtaacttgctcgaatctgatcatttaaatcccaaa |
24716742 |
T |
|
| Q |
424 |
tgactttgctgcatttctctaagatatctccaggttttccgtcatttttctctactcgatcaatgagagccagcatacagcgtaatttcatctcttccat |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
24716743 |
tgactttgctgcatttctctaagatatctccaggttttacgtcatttttctctactcgatcaatgagagccagcatacagcgtaattttatctcctccat |
24716842 |
T |
|
| Q |
524 |
gtgcactagctcttctctacctttgtaccgtggacccatggataccacccttggcacgtaagcttcttcgtttgatgagtttacaaattctactggaact |
623 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
24716843 |
gtgcaccagctcttctctacctttgtaccgtggacccatggataccactcttggcacgtaagcttcttcgtttgttgagtctacaaattctactggaact |
24716942 |
T |
|
| Q |
624 |
aaggaaatgctgcatgattgaatgtattcgtggtctacagagtttaacaatgtattcatacat |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24716943 |
aaggaaatgctgcatgattgaatgtattcgtggtctacagagtttaacaatgtattcatacat |
24717005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 24807627 - 24807846
Alignment:
| Q |
25 |
ggtgaggggggtgaatatcaaggctctgaacttggggcagagagtagcctaaaatagacagggcgagattattgattttgacggctctcttctttgaatc |
124 |
Q |
| |
|
||||||||| | ||| |||||||| |||||||| || |||||||||||||||||| |||||| ||| |||| |||||| |||||||| ||| |||| |
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|
| T |
24807627 |
ggtgaggggaattaatgtcaaggctttgaacttgagggagagagtagcctaaaatacgcagggcaagactattaattttgttggctctctgcttgaaatc |
24807726 |
T |
|
| Q |
125 |
tcgatcnnnnnnnttgggggaaagtattttagaaagctcgtggacgatgaaaattggtatttgattctcaaacaaggcaagatcagacaagacatcatcg |
224 |
Q |
| |
|
| | | |||| ||||| |||||||||| ||||||||||| |||| |||||||||||||| |||||| | ||||||||||||||||||||| |
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| T |
24807727 |
ttccttaaaaaactgggggaaaagtgttttagaaagggcgtggacgatggaaataggtatttgattctctaacaagacgagatcagacaagacatcatcg |
24807826 |
T |
|
| Q |
225 |
ttttttagcacttgaggtgc |
244 |
Q |
| |
|
|||| ||||||||| |||| |
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|
| T |
24807827 |
ttttgaagcacttgaagtgc |
24807846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 24898968 - 24898856
Alignment:
| Q |
564 |
gataccacccttggcacgtaagcttcttcgtttgatgagtttacaaattctactggaactaaggaaatgctgcatgattgaatgtattcgtggtctacag |
663 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| || |||| | ||||||| ||| ||||| |||||||||||||| ||||||||||| | |
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|
| T |
24898968 |
gataccacccttggcatgtaagcttcttcgttcaatgagtttttaagttcttcaggaactatggatatgctacatgattgaatgtaatcgtggtctaccg |
24898869 |
T |
|
| Q |
664 |
agtttaacaatgt |
676 |
Q |
| |
|
| ||||||||||| |
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|
| T |
24898868 |
attttaacaatgt |
24898856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 495 - 586
Target Start/End: Original strand, 24808082 - 24808176
Alignment:
| Q |
495 |
agcatacagcgtaatttcatctcttccatgtgcactagctcttctctac---ctttgtaccgtggacccatggataccacccttggcacgtaagc |
586 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||||||| | |||||| |
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|
| T |
24808082 |
agcatacagcgtaattttatctcttccaagtgcattagctcttctctactatttttgtatcgtggacccatggataccacccttggaatgtaagc |
24808176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 336
Target Start/End: Original strand, 24799816 - 24799949
Alignment:
| Q |
203 |
aagatcagacaagacatcatcgttttttagcacttgaggtgcgaaaagacaaggagtaaagttcaattgacttgatagttgagaatcaagttcgagttct |
302 |
Q |
| |
|
||||| |||||||| ||||||||||| || |||||||||| || | ||||||| | ||||| | ||||||||||||||| || ||||| | | || |
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|
| T |
24799816 |
aagataagacaagatatcatcgttttggagaacttgaggtgtaaaggaaaaaggagtgacattcaagtaacttgatagttgagagtcgagttcaaatcct |
24799915 |
T |
|
| Q |
303 |
ttcgtgatgagaagctctagcagaaaacaaccat |
336 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |
|
|
| T |
24799916 |
ttcgtgattagaagctctagtagaaaacaaccat |
24799949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 572 - 676
Target Start/End: Complemental strand, 24841860 - 24841756
Alignment:
| Q |
572 |
ccttggcacgtaagcttcttcgtttgatgagtttacaaattctactggaactaaggaaatgctgcatgattgaatgtattcgtggtctacagagtttaac |
671 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || |||| |||||| | | |||||| || ||||||||||| ||||||||||||| | |||| |
|
|
| T |
24841860 |
ccttggcatgtaagcttcttcgtttgatgagtttttaagttcttttggaaccacaggaatgctacaagattgaatgtaatcgtggtctacagtttgtaac |
24841761 |
T |
|
| Q |
672 |
aatgt |
676 |
Q |
| |
|
||||| |
|
|
| T |
24841760 |
aatgt |
24841756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 649
Target Start/End: Original strand, 24755847 - 24755930
Alignment:
| Q |
566 |
taccacccttggcacgtaagcttcttcgtttgatgagtttacaaattctactggaactaaggaaatgctgcatgattgaatgta |
649 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||||| || |||| | ||||||| || ||||||||||||||||||||| |
|
|
| T |
24755847 |
taccacccttggcatataagcttctttgtttgttgagtttttaagttcttcaggaactatgggaatgctgcatgattgaatgta |
24755930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 414
Target Start/End: Original strand, 24807894 - 24808007
Alignment:
| Q |
301 |
ctttcgtgatgagaagctctagcagaaaacaaccatccactagcataattttcacgagttcgtatacttcaaggctgatgtcctccacgtaacttgctcg |
400 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||||| |||| |||||||||| ||||||| | ||| | | |||||| |||||||||||||| || |
|
|
| T |
24807894 |
cttttgtgatgagaagttctaacagaaaacaaccatcaactaccataattttcgcgagttcttgctcttgcaagtggatgtcatccacgtaacttgcacg |
24807993 |
T |
|
| Q |
401 |
aatctgatcattta |
414 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
24807994 |
aatctcttcattta |
24808007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 24897365 - 24897466
Alignment:
| Q |
312 |
agaagctctagcagaaaacaaccatccactagcataattttcacgagttcgtatacttcaaggctgatgtcctccacgtaacttgctcgaatctgatcat |
411 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||||||| ||||||| | | ||| ||| ||| || |||| || ||||||||||||||||||| |
|
|
| T |
24897365 |
agaagctctaacagaaaacaaccatctactaacataatttttgcgagttcatgttgttctaggtcgatatcaaccacatagcttgctcgaatctgatcat |
24897464 |
T |
|
| Q |
412 |
tt |
413 |
Q |
| |
|
|| |
|
|
| T |
24897465 |
tt |
24897466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 24727839 - 24727880
Alignment:
| Q |
309 |
atgagaagctctagcagaaaacaaccatccactagcataatt |
350 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
24727839 |
atgagaagctctaacagaaaacatgcatccactagcataatt |
24727880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 24536933 - 24536873
Alignment:
| Q |
177 |
attggtatttgattctcaaacaaggcaagatcagacaagacatcatcgttttttagcactt |
237 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||||||||| || | | ||||||||| |
|
|
| T |
24536933 |
attggtatctgattctccaacaaggtgagatcagacaagacatcttcatctcttagcactt |
24536873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 24827686 - 24827738
Alignment:
| Q |
309 |
atgagaagctctagcagaaaacaaccatccactagcataattttcacgagttc |
361 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
24827686 |
atgagaagctccaacagaaaacatccatccactaacataattttagcgagttc |
24827738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 24835437 - 24835489
Alignment:
| Q |
309 |
atgagaagctctagcagaaaacaaccatccactagcataattttcacgagttc |
361 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| || ||||||||| ||||||| |
|
|
| T |
24835437 |
atgagaagctctaacagaaaacatccatccaataacataattttagcgagttc |
24835489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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