View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15344_low_21 (Length: 310)
Name: NF15344_low_21
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_21 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 19505404 - 19505104
Alignment:
| Q |
9 |
cataatacttgagacactaaaacgtggatagaaatcgggaaaaatataagaaacatctccattgttaaaaatggtccaacttatatataagttagatatc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19505404 |
cataatacttgagacactaaaacgtggatagaaatagggaaaaatataagaaacatctccattgttaaaaatggtccaacttatatataagttagatatc |
19505305 |
T |
|
| Q |
109 |
caaattttacaatcaagaaatttgaaacactaataatttgtttaaaagatgagaaaatggaaaataaaagaaagaggcactaaaccccc--acatccata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
19505304 |
caaattttacaatcaagaaatttgaaacactaataatttgtttaaaagatgagaaaatggaaaataaaagaaagaggcactaattccccatatatccata |
19505205 |
T |
|
| Q |
207 |
tgctttttaccttaaatttaaaccaaccacacaannnnnnnccgtgtaatctatgttatcgatgtatcaaatattatatattatgtgttctgaattggac |
306 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||| | |
|
|
| T |
19505204 |
tgttttttaccttaaatttaaaacaaccacacatatttttttggtgtaatctatgttatcgatg---catatattatatattacatgttctgaattggcc |
19505108 |
T |
|
| Q |
307 |
ataa |
310 |
Q |
| |
|
|||| |
|
|
| T |
19505107 |
ataa |
19505104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University