View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_22 (Length: 307)
Name: NF15344_low_22
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 39716293 - 39716013
Alignment:
| Q |
18 |
agttctatgacttcgttttgggttatatatgccagtttataattaagtcatttcgtgtactaattaaattttggatccatgttccattccgtcccatgtg |
117 |
Q |
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| T |
39716293 |
agttctatgacttcgttttgggttatatatgccagtttataattaagtcatttcgtgcactaattaaattttggatccatgttccat----------gtg |
39716204 |
T |
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| Q |
118 |
tgaatattttcaaannnnnnncattatatgatattcaaagctaacagtgaatattggttgatacattgatttggcctttttaaaagtcatgtttattgga |
217 |
Q |
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| T |
39716203 |
tgaatattttcaaatttttttcattatatgatattcaaagctaacagtgaatattggttgatacattgatttggcctttttaaaagtcatgtttattgca |
39716104 |
T |
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| Q |
218 |
aaatatatcagccaatccaaaacttaaatttttagatgaatttagaa-aaaacaaataaataggttggagctttggttggacgtgaaatct |
307 |
Q |
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| T |
39716103 |
aaatatatcaaccaatccaaaacttaaatttttagatgaatttagaaaaaaacaaataaataggttggagctttggttggacgtgaaatct |
39716013 |
T |
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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 41563421 - 41563348
Alignment:
| Q |
61 |
taagtcatttcgtgtactaattaaattttggatccatgttccattcc---gtcccatgtgtgaatattttcaaa |
131 |
Q |
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| T |
41563421 |
taagtcatttcgtgtactaattaaattgtggatccatgatccattcctatgtcccatgtgtgaacattttcaaa |
41563348 |
T |
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