View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15344_low_24 (Length: 292)

Name: NF15344_low_24
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15344_low_24
NF15344_low_24
[»] chr1 (8 HSPs)
chr1 (99-287)||(25670504-25670692)
chr1 (107-287)||(4438706-4438886)
chr1 (99-185)||(4433928-4434014)
chr1 (99-185)||(25665723-25665809)
chr1 (101-185)||(49359642-49359726)
chr1 (101-185)||(49361938-49362022)
chr1 (17-82)||(47248553-47248618)
chr1 (99-144)||(50546060-50546105)
[»] chr2 (3 HSPs)
chr2 (113-287)||(12327137-12327311)
chr2 (99-185)||(12332004-12332090)
chr2 (102-211)||(6257702-6257811)
[»] chr6 (4 HSPs)
chr6 (99-211)||(20756344-20756456)
chr6 (120-210)||(12795966-12796056)
chr6 (99-143)||(18970658-18970702)
chr6 (99-150)||(15997531-15997582)
[»] chr4 (7 HSPs)
chr4 (99-211)||(21436559-21436671)
chr4 (102-186)||(17736585-17736669)
chr4 (100-186)||(31138694-31138780)
chr4 (102-186)||(31136033-31136117)
chr4 (99-211)||(43428477-43428589)
chr4 (120-211)||(51205875-51205966)
chr4 (104-150)||(33581133-33581179)
[»] scaffold0159 (1 HSPs)
scaffold0159 (99-185)||(28155-28241)
[»] chr8 (4 HSPs)
chr8 (99-186)||(28540327-28540414)
chr8 (17-82)||(42310741-42310806)
chr8 (102-185)||(37811173-37811256)
chr8 (99-143)||(16723684-16723728)
[»] chr3 (7 HSPs)
chr3 (102-186)||(54524648-54524732)
chr3 (99-194)||(54516963-54517058)
chr3 (99-185)||(40934791-40934877)
chr3 (99-185)||(36244111-36244197)
chr3 (138-210)||(38019336-38019408)
chr3 (102-143)||(20111906-20111947)
chr3 (259-287)||(54524583-54524611)
[»] chr7 (2 HSPs)
chr7 (108-186)||(38539793-38539871)
chr7 (125-186)||(38539982-38540043)
[»] chr5 (2 HSPs)
chr5 (99-186)||(33573985-33574073)
chr5 (99-143)||(35424267-35424311)
[»] scaffold1370 (1 HSPs)
scaffold1370 (99-143)||(203-247)
[»] scaffold0285 (1 HSPs)
scaffold0285 (99-143)||(17542-17586)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 99 - 287
Target Start/End: Complemental strand, 25670692 - 25670504
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25670692 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 25670593  T
Q  199 gaatcacgtgacatctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcttctcac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25670592 gaatcacgtgacatctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcttctcac 25670504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 107 - 287
Target Start/End: Complemental strand, 4438886 - 4438706
Alignment:
Q  107 caaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4438886 caaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacg 4438787  T
Q  207 tgacatctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcttctcac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4438786 tgacatctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcttctcac 4438706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 4433928 - 4434014
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4433928 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 4434014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 25665723 - 25665809
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25665723 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 25665809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 49359642 - 49359726
Alignment:
Q  101 gcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 185  Q
    ||||||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  49359642 gcatttcaaatgagaggagtttttaaatgagagggtgagaggatgaaacagtggccattggattagttagatggctgtgattaaa 49359726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 49362022 - 49361938
Alignment:
Q  101 gcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 185  Q
    ||||||||||| ||||||||||| |||||||| | | ||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  49362022 gcatttcaaatgagaggagtttttaaatgagaaggtgagaggatgaaacagtggccgttgaattagttagatggctgtgattaaa 49361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 47248618 - 47248553
Alignment:
Q  17 gattattgggttcaactataacaaacaacaaagtaatccaatgtnnnnnnngtaatgcaatttgat 82  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||       |||||||||||||||    
T  47248618 gatttttgggttcaactgtaacaaacaacaaagcaatccaatgtaaaaaaagtaatgcaatttgat 47248553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 50546105 - 50546060
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggat 144  Q
    |||||| |||| |||||||| ||||||||||||||| |||||||||    
T  50546105 gggcatatcaagtaagaggacttttaaaatgagagggtaagaggat 50546060  T

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Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 113 - 287
Target Start/End: Original strand, 12327137 - 12327311
Alignment:
Q  113 agaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgacat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12327137 agaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgacat 12327236  T
Q  213 ctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcttctcac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12327237 ctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcttctcac 12327311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 12332090 - 12332004
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 185  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12332090 gggcatttcaaataagaggagttttaaaatgagaggttaagaggatgaaacagtggccattggattaattagatggctgtgattaaa 12332004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 6257811 - 6257702
Alignment:
Q  102 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaa 201  Q
    |||||||||| |||||| |||| |||||||| | | |||||||||||| |||||| || ||||| |||||||||||||||| ||||||||||| |||       
T  6257811 catttcaaatgagaggactttttaaatgagaaggtgagaggatgaaactgtggcctttagattatttagatggctgtgatttaattctcacattagtagg 6257712  T
Q  202 tcacgtgaca 211  Q
    ||||||||||    
T  6257711 tcacgtgaca 6257702  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 20756456 - 20756344
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 198  Q
    ||||||||||||| ||||||||||| |||||||||| | |||| |||||| ||||||||||||||||| |||||| |||||||| ||||||||||| |||    
T  20756456 gggcatttcaaatgagaggagtttttaaatgagagggtgagagcatgaaatagtggccattggattaaatagatgcctgtgatttaattctcacattagt 20756357  T
Q  199 gaatcacgtgaca 211  Q
     | ||||||||||    
T  20756356 aactcacgtgaca 20756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 12796056 - 12795966
Alignment:
Q  120 ttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgac 210  Q
    |||| |||||||||||| |||||| ||||||||| ||||||||||| ||||||| || ||||| ||||  | ||| ||||| |||||||||    
T  12796056 tttttaaatgagaggatgagaggaagaaacagtgaccattggattagttagatgactatgatttaatttactcattagtgagtcacgtgac 12795966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 18970702 - 18970658
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagagga 143  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  18970702 gggcatttcaaataagaggacttttaaaatgagaggatgagagga 18970658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 15997582 - 15997531
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaaca 150  Q
    ||||||||||||| ||||||||||| |||||||||| | |||||||||||||    
T  15997582 gggcatttcaaatgagaggagtttttaaatgagagggtgagaggatgaaaca 15997531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 21436559 - 21436671
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 198  Q
    ||||||||||||| ||||||||||| |||||||||| | |||| |||||| ||||||||||||||||| |||||| |||||||| ||||||||||| |||    
T  21436559 gggcatttcaaatgagaggagtttttaaatgagagggtgagagcatgaaatagtggccattggattaaatagatgactgtgatttaattctcacattagt 21436658  T
Q  199 gaatcacgtgaca 211  Q
     | ||||||||||    
T  21436659 aactcacgtgaca 21436671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 17736585 - 17736669
Alignment:
Q  102 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 186  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||    
T  17736585 catttcaaatgagaggagttttaaaatgagaggatgagagcatgaaatagtggccattggattaaatagatggctgttattaaat 17736669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 31138780 - 31138694
Alignment:
Q  100 ggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 186  Q
    |||||||||||| ||||||||||||||||||||| || |||| |||||| ||||| ||||||||||| ||||||||||| |||||||    
T  31138780 ggcatttcaaatgagaggagttttaaaatgagagcatgagagcatgaaatagtggtcattggattaaatagatggctgttattaaat 31138694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 31136033 - 31136117
Alignment:
Q  102 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 186  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||| ||||| |||||| |||| |||||||    
T  31136033 catttcaaatgagaggagttttaaaatgagaggatgagagcatgaaatagtggccattgaattaaatagatgactgttattaaat 31136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 43428477 - 43428589
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 198  Q
    |||||||| |||| |||||| |||| |||||||||| | |||||||||||| |||||| ||  |||| |||||||||||||||| ||||||||||| |||    
T  43428477 gggcattttaaatgagaggactttttaaatgagagggtgagaggatgaaactgtggcctttaaattatttagatggctgtgatttaattctcacattagt 43428576  T
Q  199 gaatcacgtgaca 211  Q
       ||||||||||    
T  43428577 aggtcacgtgaca 43428589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 51205875 - 51205966
Alignment:
Q  120 ttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgaca 211  Q
    |||| |||||||||  | |||||||||||| |||||| |||||||| | |||||||||||||| ||||||||||| |||   ||||||||||    
T  51205875 tttttaaatgagagagtgagaggatgaaactgtggcctttggattattgagatggctgtgatttaattctcacattagtaggtcacgtgaca 51205966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 33581179 - 33581133
Alignment:
Q  104 tttcaaataagaggagttttaaaatgagaggataagaggatgaaaca 150  Q
    |||||||| ||||||||||| |||||||||| | |||||||||||||    
T  33581179 tttcaaatgagaggagtttttaaatgagagggtgagaggatgaaaca 33581133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 28155 - 28241
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 185  Q
    |||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  28155 gggcatttcaaataagaggactttttaaatgagagggtgagaggatgaaacagtggccattagattagttagatggctgtgattaaa 28241  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 28540414 - 28540327
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 186  Q
    ||||||||||||| |||||| ||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||    
T  28540414 gggcatttcaaatgagaggacttttaaaatgagaggatgagagcatgaaatagtggccattggattaaatagatggctgtaattaaat 28540327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 42310741 - 42310806
Alignment:
Q  17 gattattgggttcaactataacaaacaacaaagtaatccaatgtnnnnnnngtaatgcaatttgat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  42310741 gattattgggttcaactataacaaacaacaaagtaatccaatgtaaaaaaagtaatgcaatttgat 42310806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 37811173 - 37811256
Alignment:
Q  102 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 185  Q
    |||||||||| ||| || |||| |||||||||||| ||||||| ||| | |||||| ||||||||||||||| || ||||||||    
T  37811173 catttcaaatgagatgactttttaaatgagaggatgagaggataaaataatggccaatggattaattagatgtctatgattaaa 37811256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 16723684 - 16723728
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagagga 143  Q
    ||||||||||||| |||||| ||||||||||||||| | ||||||    
T  16723684 gggcatttcaaatgagaggacttttaaaatgagagggtgagagga 16723728  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 54524732 - 54524648
Alignment:
Q  102 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 186  Q
    |||||||||| |||||| ||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||| ||| |||||||    
T  54524732 catttcaaatgagaggacttttaaaatgagaggatgagagcatgaaatagtggccattggattaaatagatggttgttattaaat 54524648  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 54516963 - 54517058
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacat 194  Q
    ||||||||||||| ||||||||||| |||||||||| | ||||| |||||  |||||| |||||||| |||||||||||||||| ||||| |||||    
T  54516963 gggcatttcaaatgagaggagtttttaaatgagagggtgagagggtgaaattgtggcctttggattatttagatggctgtgatttaattcccacat 54517058  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 40934877 - 40934791
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 185  Q
    ||||||||||||||||||||  ||| |||||||||| | ||||||| ||||| |||||||||||||   || |||||||||||||||    
T  40934877 gggcatttcaaataagaggacattttaaatgagagggtgagaggattaaacaatggccattggattggatacatggctgtgattaaa 40934791  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 36244197 - 36244111
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 185  Q
    ||||||||||||| ||| || |||| |||||||||| | ||||||| ||||| || ||||||||||| ||| ||||||| |||||||    
T  36244197 gggcatttcaaatgagatgattttttaaatgagagggtgagaggattaaacattgaccattggattagttaaatggctgagattaaa 36244111  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 38019408 - 38019336
Alignment:
Q  138 agaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgac 210  Q
    |||||| |||||||||||||||||| || |||||||||||||||| ||||  | ||| ||||| |||||||||    
T  38019408 agaggaagaaacagtggccattggactagttagatggctgtgatttaatttactcatcagtgagtcacgtgac 38019336  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 20111947 - 20111906
Alignment:
Q  102 catttcaaataagaggagttttaaaatgagaggataagagga 143  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  20111947 catttcaaataagaggacttttaaaatgagaggatgagagga 20111906  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 54524611 - 54524583
Alignment:
Q  259 cctttctaacatacgattcttcttctcac 287  Q
    |||||||||||||||||||||||||||||    
T  54524611 cctttctaacatacgattcttcttctcac 54524583  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 38539793 - 38539871
Alignment:
Q  108 aaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 186  Q
    |||| |||||| ||||||||||||||||| |||| |||||| |||| |||||||||||| ||||||| ||| |||||||    
T  38539793 aaatgagaggacttttaaaatgagaggatgagagcatgaaatagtgaccattggattaaatagatggttgttattaaat 38539871  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 38540043 - 38539982
Alignment:
Q  125 aaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 186  Q
    |||||||||||| | || |||||| ||||||||||| ||||| ||||||||||| |||||||    
T  38540043 aaatgagaggatgaaagcatgaaatagtggccattgaattaaatagatggctgttattaaat 38539982  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 33574073 - 33573985
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggatt-aattagatggctgtgattaaat 186  Q
    |||||| |||| | |||||| ||||||||||||||| | ||||||||||| | || || || |||| ||||||||||||||||||||||    
T  33574073 gggcatatcaagtgagaggacttttaaaatgagagggtgagaggatgaaataatgacccttagattaaattagatggctgtgattaaat 33573985  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 35424267 - 35424311
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagagga 143  Q
    ||||||||||||| |||||| ||||||||||||||| | ||||||    
T  35424267 gggcatttcaaatgagaggacttttaaaatgagagggtgagagga 35424311  T

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Target: scaffold1370 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 203 - 247
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagagga 143  Q
    ||||||||||||| |||||| |||| |||||||||||| ||||||    
T  203 gggcatttcaaatgagaggactttttaaatgagaggatgagagga 247  T

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Target: scaffold0285 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 17586 - 17542
Alignment:
Q  99 gggcatttcaaataagaggagttttaaaatgagaggataagagga 143  Q
    ||||||||||||| |||||| |||| |||||||||||| ||||||    
T  17586 gggcatttcaaatgagaggattttttaaatgagaggatgagagga 17542  T

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