View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15344_low_25 (Length: 279)

Name: NF15344_low_25
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15344_low_25
NF15344_low_25
[»] chr1 (11 HSPs)
chr1 (1-267)||(13162147-13162413)
chr1 (1-267)||(13130454-13130720)
chr1 (1-267)||(13095025-13095291)
chr1 (6-247)||(14708060-14708301)
chr1 (3-256)||(13069499-13069752)
chr1 (9-247)||(13007822-13008060)
chr1 (1-247)||(13101614-13101860)
chr1 (12-247)||(30367425-30367660)
chr1 (1-256)||(13205085-13205340)
chr1 (13-235)||(13067510-13067728)
chr1 (64-227)||(13010922-13011085)
[»] chr6 (2 HSPs)
chr6 (40-211)||(31376166-31376338)
chr6 (14-78)||(31396165-31396229)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 13162147 - 13162413
Alignment:
Q  1 ccaacattgagccatttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||    
T  13162147 ccaacattgagccatttttgcaacttccataaactacttggaatgaagtgcctgtaaaatatcacttcctccatcacaggaagagattttttataaggaa 13162246  T
Q  101 tttttctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttg 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13162247 tttctctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttg 13162346  T
Q  201 caaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccaccttc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13162347 caaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccaccttc 13162413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 13130454 - 13130720
Alignment:
Q  1 ccaacattgagccatttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13130454 ccaacattgagccatttttgcaacttccataaactacttggaatgaagtgcctgtataatatcacttcctccatcacaggaagagattctttatacggaa 13130553  T
Q  101 tttttctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13130554 tttttctaagctgattaaacttgtttggaaggcaatttggatcaaatccgaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttg 13130653  T
Q  201 caaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccaccttc 267  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||  |||||||||    
T  13130654 caaatccacatgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctccaccttc 13130720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 13095025 - 13095291
Alignment:
Q  1 ccaacattgagccatttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||| ||||    
T  13095025 ccaacattgagccatttttgcaacttccataaactacttggaatgaagtgcctgtaaaaaatcacttcctccatcacaggaagagagtttttataaggaa 13095124  T
Q  101 tttttctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttg 200  Q
    ||| | |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13095125 tttctataaggtgattaaacttgtttggaaggcaatttggatcaaatccgaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatcttg 13095224  T
Q  201 caaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccaccttc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||||    
T  13095225 caaatccacctgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctccaccttc 13095291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 14708060 - 14708301
Alignment:
Q  6 attgagccatttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaattttt 105  Q
    ||||||||||||||||  ||||||||||| || |||||| ||||||||||| ||||||||||||||||||||||| ||||||| |  ||| | ||||| |    
T  14708060 attgagccatttttgctgcttccataaacaacatggaataaagtgcctgtacaatatcacttcctccatcacagggagagattttagataagaaatttct 14708159  T
Q  106 ctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttgcaaat 205  Q
    ||||||| | |||||||||||||||  |||||||||||||||||||||| |||   | || |||| ||||| ||||||||||| ||| ||||||| ||||    
T  14708160 ctaagctcactaaacttgtttggaaaacaatttggatcaaatccaaatacaatggtgaagatgctgtcaaaagtgaacctattcaagacatcttgtaaat 14708259  T
Q  206 ccacctgagctcctgcttcagatacatcattaagaaatggta 247  Q
    |||||||||| ||| |||| ||||||| ||||||||||||||    
T  14708260 ccacctgagcacctacttctgatacatgattaagaaatggta 14708301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 13069752 - 13069499
Alignment:
Q  3 aacattgagccatttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaatt 102  Q
    ||||| |||||||||||||| |||||| | |  ||||||||||||||||| ||| |||||||| || || ||||||| |||||||| || |||   ||||    
T  13069752 aacatggagccatttttgcagcttccaaagataacttggaatgaagtgccggtacaatatcacctcatctatcacagcaagagatttttgataatcaatt 13069653  T
Q  103 tttctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttgca 202  Q
    | | | |||| ||||||||||||| |||||||||| |||||||||||||||  |||   |||| |||||||||| ||||||||| | |||||||| | ||    
T  13069652 tctgttagctcattaaacttgtttagaaggcaattaggatcaaatccaaatgcaatagtgcagatgctatcaaaagtgaacctactcaaggcatcctcca 13069553  T
Q  203 aatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagt 256  Q
      ||||||||||| |||  |||||||||||||||||||||||||| ||| ||||    
T  13069552 ggtccacctgagcacctatttcagatacatcattaagaaatggtagtaggtagt 13069499  T

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Target: chr1; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 13007822 - 13008060
Alignment:
Q  9 gagccatttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaatttttcta 108  Q
    |||||||||||||| |||||||| || || |||  ||||||||| ||| | |||||| || || || ||||||||||||| || ||| | ||||| |||     
T  13007822 gagccatttttgcagcttccatagacaacgtggtttgaagtgccggtaaattatcacctcatctataacaggaagagatttttgataagcaatttctctt 13007921  T
Q  109 agctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatcca 208  Q
    |||| |||||||||||||||||||||||| |||||||||||||||  |||   |||| |||| ||||| ||||||||| | |||||||| | ||  ||||    
T  13007922 agctcattaaacttgtttggaaggcaattaggatcaaatccaaatgcaatagtgcagatgctgtcaaaagtgaacctactcaaggcatcctccaggtcca 13008021  T
Q  209 cctgagctcctgcttcagatacatcattaagaaatggta 247  Q
    ||||||| |||  ||||||||||||||||||||||||||    
T  13008022 cctgagcacctatttcagatacatcattaagaaatggta 13008060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 13101614 - 13101860
Alignment:
Q  1 ccaacattgagccatttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaa 100  Q
    ||||| |||||||||||||||| |||||||| |  |||||| |||||||| | ||| | |||||| || ||||||||||||||||||| || ||| | ||    
T  13101614 ccaacgttgagccatttttgcagcttccatagataacttggtatgaagtgtcggtaaattatcacctcatccatcacaggaagagatttttgataagcaa 13101713  T
Q  101 tttttctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttg 200  Q
    | |  ||||||| |||||||||||||||||||||||| |||||||||||||||  |||   |||| |||| ||||| ||||||||| ||||| |||| |     
T  13101714 tatccctaagctcattaaacttgtttggaaggcaattaggatcaaatccaaatgcaatagtgcagatgctgtcaaaagtgaacctactaaagacatcctc 13101813  T
Q  201 caaatccacctgagctcctgcttcagatacatcattaagaaatggta 247  Q
    ||  ||||| ||||| |||  ||||||||||||||||||||| ||||    
T  13101814 caggtccacatgagcacctatttcagatacatcattaagaaacggta 13101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 30367660 - 30367425
Alignment:
Q  12 ccatttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaatttttctaagc 111  Q
    |||||| |||| |||||||||   ||| |||||||||| ||||||||||| ||||||||| ||||||  |||||||| || ||| | ||||| ||||||     
T  30367660 ccatttctgcagcttccataagacactaggaatgaagttcctgtagaatagcacttcctctatcacaataagagatttttgatatgaaatttctctaaga 30367561  T
Q  112 tgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacct 211  Q
    | | ||| ||| |||||||| ||||| | |||||||||||||| ||| | |||| |||| ||||| ||||||||||| |||  ||||||||| |||||||    
T  30367560 tcactaatcttatttggaagccaattagaatcaaatccaaatacaataatgcagatgctgtcaaaagtgaacctattcaagatatcttgcaagtccacct 30367461  T
Q  212 gagctcctgcttcagatacatcattaagaaatggta 247  Q
     ||  |||||||||||||||||||||| ||||||||    
T  30367460 cagaacctgcttcagatacatcattaataaatggta 30367425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 13205085 - 13205340
Alignment:
Q  1 ccaacattgagccatttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaa 100  Q
    ||||||| |||||||||||| | |||||||| |  ||||||||||||||||| ||| | |||||| || || ||||| | ||||| || || ||| | ||    
T  13205085 ccaacatggagccatttttgtagcttccatagaaaacttggaatgaagtgccggtacattatcacctcatctatcactgtaagagctttttgataagcaa 13205184  T
Q  101 tttttctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttg 200  Q
    ||| | | |||| |||||||||||||||||||||||| |||||||||||||||  |||   |||| |||||||||| ||||||||| | |||||||| |     
T  13205185 tttctgttagctcattaaacttgtttggaaggcaattaggatcaaatccaaatgcaatagtgcagatgctatcaaaagtgaacctactcaaggcatcctc 13205284  T
Q  201 caaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagt 256  Q
    ||  |||| |||||| |||  |||||||||||||| ||||||||||| ||| ||||    
T  13205285 caggtccagctgagcacctatttcagatacatcatcaagaaatggtagtaggtagt 13205340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 13067728 - 13067510
Alignment:
Q  13 catttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaatttttctaagct 112  Q
    ||||||| || |||||||| |  | |||||||||||||| |||| |||||||||||| | |||| ||  ||||||| |||||||| ||||| ||||||||    
T  13067728 cattttttcagcttccatagataatttggaatgaagtgcttgtacaatatcacttcccctatcatagttagagattttttatacgcaatttctctaagct 13067629  T
Q  113 gattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctg 212  Q
     ||||||||| |||||||||||||| |||||||||||||||| |||   ||||  |||||     ||||||||| | |||||||||||||| ||||||||    
T  13067628 cattaaacttatttggaaggcaattaggatcaaatccaaatataatggtgcagaggctat----agtgaacctactcaaggcatcttgcaagtccacctg 13067533  T
Q  213 agctcctgcttcagatacatcat 235  Q
    ||  ||||||||||| |||||||    
T  13067532 agaacctgcttcagacacatcat 13067510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 13010922 - 13011085
Alignment:
Q  64 acttcctccatcacaggaagagattctttatacggaatttttctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggc 163  Q
    |||||||| ||||||  |||||| | |||||| | ||||| |||||||| | |||||||||||||||||||||| |||||||||||||||| ||    ||    
T  13010922 acttcctctatcacactaagagaatttttataagcaatttctctaagctcactaaacttgtttggaaggcaattaggatcaaatccaaatacaacggtgc 13011021  T
Q  164 agctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacctgagctcctgcttcaga 227  Q
    ||  ||| ||||| || |||||| | |||| ||||||||| ||||||||||  |||||||||||    
T  13011022 agaggctgtcaaatgttaacctactcaaggaatcttgcaagtccacctgagaacctgcttcaga 13011085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 31376166 - 31376338
Alignment:
Q  40 ggaatgaagtgcctgtagaatatcacttcctccatcacaggaagagattctttatacggaatttttctaagctgattaaacttgtttggaaggcaatttg 139  Q
    ||||||||||   ||||||||| ||||||||| ||||||  |||||||| || ||| | ||||| |||||| | | ||| ||| |||||||| ||||| |    
T  31376166 ggaatgaagtttatgtagaataacacttcctctatcacaataagagatttttgatatgaaatttctctaagatcactaatcttatttggaagccaattag 31376265  T
Q  140 gatcaaatccaaataaaat-caggcagctgctatcaaaggtgaacctattaaaggcatcttgcaaatccacct 211  Q
    ||||||||||||||| |||  | |||| |||| ||||| ||||||||||| |||  ||||||||| |||||||    
T  31376266 gatcaaatccaaatacaataaatgcagatgctgtcaaaagtgaacctattcaagatatcttgcaagtccacct 31376338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 31396229 - 31396165
Alignment:
Q  14 atttttgcaacttccataaactacttggaatgaagtgcctgtagaatatcacttcctccatcaca 78  Q
    |||| |||| ||||||||||| ||| |||||||||| ||| ||||||||||||||||| ||||||    
T  31396229 atttctgcagcttccataaacaactaggaatgaagttcctatagaatatcacttcctctatcaca 31396165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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