View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_3 (Length: 658)
Name: NF15344_low_3
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Original strand, 45628122 - 45628750
Alignment:
| Q |
1 |
acaattgaaataatgcagatatgtgaatgctggtattattatgctgcatacatagttcataaatatttcaaggggctatcaggggctgttgagtttgtac |
100 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45628122 |
acaattgaaataatggagatatgtgaatgctggtattattatgctgcatacatagttcataaatatttcaaggggctatcaggggttgttgagtttgtac |
45628221 |
T |
|
| Q |
101 |
cttaaaacgaagaaaagaagaatttggtgccctttaaagctgttgtgaaaggtgttttgcttcatcagcttgttcaggcaattgctacactcatcttggt |
200 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45628222 |
cttaaaatgaagaaaagaagaatttggtgccctttaaagctgttgtgaaaggtgttttgcttcatcagcttgttcaggcaattgctacactcatcttggt |
45628321 |
T |
|
| Q |
201 |
aactcattatacatgcgtcaatctctattatccagtaataatagttgttcacacttcacatttatagttaatagagtttatagttgaaaatcttattctg |
300 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45628322 |
aactcattatacatgtgttaatctctattctccagtaataatagttgttcacacttcacatttgtagttaatagagtttatagttgaaaatcttattctg |
45628421 |
T |
|
| Q |
301 |
ttttgtagttaagttaaaagcacttttagttataagcattatgtgttgcttgataacttttatgcacattatgttttgggtgtactctgttaaagctaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45628422 |
ttttgtagttaagttaaaagcacttttagttataagcattatgtgttgcttgataacttttatgcacactatgttttgggtgtactctgttaaagctaaa |
45628521 |
T |
|
| Q |
401 |
cggatttattaacatactgttaagaattcagttatagtcatttcccacactatgtaatagtttgattgatctgccttcaagtcccaacaataaactttta |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
45628522 |
cggatttattaacatactgttaagaattcagttatagtcatttcccacactatgtaatagtttgattcatctgcctccaagtcccaacaataaactttta |
45628621 |
T |
|
| Q |
501 |
ccaaaattcagtataaccccatctttattggatcttcattgcatcattacattctaaagccattcacaataagatatatttatttaattgacatttctat |
600 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
45628622 |
ccaaaattcagtataa-cccatctttattggatcttcattgcatcattgcattctaaagccattcacaataaga----------taaatgacatttctat |
45628710 |
T |
|
| Q |
601 |
ccattggtaattcatttttgtcttgttttggcatgtccat |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
45628711 |
ccattggtaattcatttttgtcttgttttggcatgtccat |
45628750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Original strand, 30784275 - 30784868
Alignment:
| Q |
1 |
acaattgaaataatgcagatatgtgaatgctggtattattatgctgcatacatagttcataaatatttcaaggggctatcaggggctgttgagtttgtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30784275 |
acaattgaaataatgcagatatgtgaatgctgatattattatgctgcatacatagttcataaatatttcaaggggctatcaggggctgttgattttgtac |
30784374 |
T |
|
| Q |
101 |
cttaaaacgaagaaaagaagaatttggtgccctttaaagctgttgtgaaaggtgttttgcttcatcagcttgttcaggcaattgctacactcatcttggt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
30784375 |
cttaaaatgaagaaaagaagaatttggtgccctttaaagctgttgtgaaaggtgttttgcttcatcggcttgttcaggcaattgctgcactcatcttggt |
30784474 |
T |
|
| Q |
201 |
aactcattatacatgcgtcaatctctattatccagtaataatagttgttcacacttcacatttatagttaatagagtttatagttgaaaatcttattctg |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30784475 |
aactcattatacatgcgttaatctctattctccagtaataatagttgttcacacttcacatttgtagttaatagagtttatagttgaaaatcttattctg |
30784574 |
T |
|
| Q |
301 |
ttttgtagttaagttaaaagcacttttagttataagcattatgtgttgcttgataacttttatgcacattatgttttgggtgtactctgttaaagctaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
30784575 |
ttttgtagttaagttaaaagcacttttag---------ttatgtgttgcttgataacttttatgcacactatgttttgggtgtaatctgttaaagctaaa |
30784665 |
T |
|
| Q |
401 |
cggatttattaacatactgttaagaattcagttatagtcatttcccacactatgtaatagtttgattgatctgccttcaagtcccaacaataaactttta |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |
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|
| T |
30784666 |
cggatttattaacatactgttaagaattcag-tatagtcatttcttacactatgtaatagtttgattcatctgcattc-agtcccaacaataaactttta |
30784763 |
T |
|
| Q |
501 |
ccaaaattcagtataaccccatctttattggatcttcattgcatcattacattctaaagccattcacaataagatatatttatttaattgacatttctat |
600 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
30784764 |
ccaaaattcagtataa-cccatctttattgcatcttcattgcatcattacattctaaagccattcacaataagatatatttatttaaatgacatttctat |
30784862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 373
Target Start/End: Original strand, 43897963 - 43898227
Alignment:
| Q |
109 |
gaagaaaagaagaatttggtgccctttaaagctgttgtgaaaggtgttttgcttcatcagcttgttcaggcaattgctacactcatcttggtaactcatt |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| |
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| T |
43897963 |
gaagaaaagaagaatttggtaccctttaaagcagttgtgaaaggtgttttgcttcagcagcttgttcaggcaattgttgcactcatcttggtaagtcatt |
43898062 |
T |
|
| Q |
209 |
atacatgcgtcaatctctattatccagtaataatagttgttcacacttcacatttatagttaatagagtttatagttgaaaatcttattctgttttgtag |
308 |
Q |
| |
|
|||| || |||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43898063 |
ctacacatgttaatctctattctccagtaactatagttgttcacacttcacatttgtagtgaatagagtttatagttgaaaatcttattctgttttgtag |
43898162 |
T |
|
| Q |
309 |
ttaagttaaaagcacttttagttataagcattatgtgttgcttgataacttttatgcacattatg |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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|
| T |
43898163 |
ttaagttaaaagcacttttagttataagcattatgcgttgcttgataacttttgtgcacgttatg |
43898227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 371 - 519
Target Start/End: Original strand, 43903026 - 43903168
Alignment:
| Q |
371 |
atgttttgggtgtactctgttaaagctaaacggatttattaacatactgttaagaattcagttatagtcatttcccacactatgtaatagtttgattgat |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
43903026 |
atgttttgggtgtactctgttaaagctaaatggatttattaacatactgttaagaattcggttatagtcatttcccacactatgtaatagtttgattcat |
43903125 |
T |
|
| Q |
471 |
ctgccttcaagtcccaacaataaacttttaccaaaattcagtataaccc |
519 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
43903126 |
ctgcc------tcccaacaataaacttttactaaaattcagtataaccc |
43903168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 374 - 519
Target Start/End: Original strand, 43898678 - 43898815
Alignment:
| Q |
374 |
ttttgggtgtactctgttaaagctaaacggatttattaacatactgttaagaattcagttatagtcatttcccacactatgtaatagtttgattgatctg |
473 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |
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|
| T |
43898678 |
ttttgggtgtactctgttaaagagaaacggatttattaacatactgttaagaattcagttatagtcatttcccacac--tgtaatagttttattcatctg |
43898775 |
T |
|
| Q |
474 |
ccttcaagtcccaacaataaacttttaccaaaattcagtataaccc |
519 |
Q |
| |
|
|| |||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
43898776 |
cc------tcccaacaataaactttttcgaaaattcagtataaccc |
43898815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 642
Target Start/End: Original strand, 29157657 - 29157730
Alignment:
| Q |
569 |
ataagatatatttatttaattgacatttctatccattggtaattcatttttgtcttgttttggcatgtccatat |
642 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| || || ||||||||| ||||||||||||||| |
|
|
| T |
29157657 |
ataagatatatttgtttaaatgacatttctatccattggtaactctttcttgtcttgtgttggcatgtccatat |
29157730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36322034 - 36322106
Alignment:
| Q |
1 |
acaattgaaataatgcagatatgtgaatgctggtattattatgctgcatacatagttcataaatatttcaagg |
73 |
Q |
| |
|
|||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36322034 |
acaattaaaataatgcattcatgtgaatgccgatattattatgctgcatacatagttcataaatatttcaagg |
36322106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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