View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15344_low_30 (Length: 254)
Name: NF15344_low_30
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_30 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 16976606 - 16976363
Alignment:
| Q |
11 |
tgagatgaactgaaaaatatatttaacctaatatccttctcttcgatgaaactgtgccatggagaaaaagtaattaggttttggaagaagatgaaatctg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16976606 |
tgagatgaactgaaaaatatatttaacctaatatccttctcttcgatgaaactgtgccatggagaaaaagtaattaggttttggaagaagatgaaatctg |
16976507 |
T |
|
| Q |
111 |
atagaacacgctggaacaacgcaagagccaccgaaacaaacaatacctgtgagaattaagtgaatcaatttgagcctttagatcaacttaaaataaaagg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16976506 |
atagaacacgctggaacaacgcaagagccaccgaaacaaacaatgcctgtgagaattaagtgaatcaatttgagcctttagatcaacttaaaataaaagg |
16976407 |
T |
|
| Q |
211 |
ataagaattggagtcaaactttattctgatcaatggataataat |
254 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16976406 |
atgagaattcgagtcaaactttattctgatcaatggataataat |
16976363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University