View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_35 (Length: 218)
Name: NF15344_low_35
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 7038908 - 7038717
Alignment:
| Q |
9 |
aggagcagagaaaagatcaatagttatgtaatcatgtgtagttgtactatattccaaccactctggaattttgctacctggatagagatacatgctatga |
108 |
Q |
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| T |
7038908 |
aggagcagaaaaaagatcaatagttatgtaatcatgtgtagttgtactatattccaaccactctggaattttgctacctggatagagatacatgctatga |
7038809 |
T |
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| Q |
109 |
ttcagattttggtcgtgatcttgatcacggttgtcatggtccaattctgatatatgtcggtatgaaaagcttatcatgttaatttgagcatt |
200 |
Q |
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| T |
7038808 |
ttcagattttggtcgtgatcttgatcacggttgtcatggtccaattctgatatatgtcggtatgaaaagcttatcatgttaatttgagcatt |
7038717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 7073138 - 7073232
Alignment:
| Q |
9 |
aggagcagagaaaagatcaatagttatgtaatcatgtgtagttgtactatattccaaccactctggaattttgctacctggatagagatacatgc |
103 |
Q |
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| T |
7073138 |
aggagcagaaaaaagatcaatagttatgtaatcatgtctagttgtactatattccaaccactctggaattttgctacctggatacacatacatgc |
7073232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 7033194 - 7033022
Alignment:
| Q |
20 |
aaagatcaatagttatgtaatcatgtgtagttgtactatattccaaccactctggaattttgctacctggatagagatacatgctatgattcagattttg |
119 |
Q |
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| T |
7033194 |
aaagatcaatagttatgtaatcatgtgtagttgtactatattccaaccactctggaatttcgctacctggatatacatatatgctgtgattgtgattgtg |
7033095 |
T |
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| Q |
120 |
gtcgtgatcttgatcacggttgtcatggtccaattctgatatatgtcggtatgaaaagcttatcatgttaatttgagcattc |
201 |
Q |
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| T |
7033094 |
attgtgatcatg---------gtcacggtcccatgtggatatatgttggtatgaaaagctcatcatgttaatttgagcattc |
7033022 |
T |
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