View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_36 (Length: 207)
Name: NF15344_low_36
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 17919212 - 17919397
Alignment:
| Q |
1 |
atgtattattccagatcaataccttgacaaagctatcaaatctggctcttttgattatgcaattgttaaattctacaataaccctaattgtcaatatgat |
100 |
Q |
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| T |
17919212 |
atgtattattccagatcaataccttgacaaagctatcaaatctggctcttttgattatgcaattgttaaattctacaataaccctaattgtcaatatgat |
17919311 |
T |
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| Q |
101 |
caaacaaacttcaatgatacattgctcacacgatcatggaattcttggacatggttagttcaactagataatgaagttttcatggg |
186 |
Q |
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| T |
17919312 |
caaacaaacttcaatgatacattgctcacacgatcatggaattcttggacatggttagttcaactagataataatgttttcatggg |
17919397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 17907905 - 17908051
Alignment:
| Q |
6 |
ttattccagatcaataccttgacaaagctatcaaatctggctcttttgattatgcaattgttaaattctacaataaccctaattgtcaatatgatcaaac |
105 |
Q |
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| T |
17907905 |
ttatgccagatcactaccttgacaaagctatcaaaactggcttgtttgattatatacttgttcaattctacaataatcctccatgtcaatatgatcaaat |
17908004 |
T |
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| Q |
106 |
aaacttcaatgatacattgctcacacgatcatggaattcttggacat |
152 |
Q |
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| T |
17908005 |
aaactcaaatgctacattgcttttacaatcatggaatgcttggacat |
17908051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 17886971 - 17887122
Alignment:
| Q |
1 |
atgtattattccagatcaataccttgacaaagctatcaaatctggctcttttgattatgcaattgttaaattctacaataaccctaattgtcaatatgat |
100 |
Q |
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| T |
17886971 |
atgttttatgccagattactaccttgacaaagctatcaaaactggcttatttgattatgtccttgttcaattctacaataaccctccatgtcaatatgat |
17887070 |
T |
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| Q |
101 |
caaacaaacttcaatgatacattgctcacacgatcatggaattcttggacat |
152 |
Q |
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| T |
17887071 |
ctaataaactcagatgctacattgctcttacaatcatggaatgcttggacat |
17887122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 17846705 - 17846856
Alignment:
| Q |
1 |
atgtattattccagatcaataccttgacaaagctatcaaatctggctcttttgattatgcaattgttaaattctacaataaccctaattgtcaatatgat |
100 |
Q |
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| T |
17846705 |
atgttttatgccagatcactaccttgacaaagctatcaaaactggcttgtttgattatatacttgttcaattctacaataatcctccatgtcaatatgat |
17846804 |
T |
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| Q |
101 |
caaacaaacttcaatgatacattgctcacacgatcatggaattcttggacat |
152 |
Q |
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| T |
17846805 |
ataataaactcagatgctacattgctcttacaatcatggaatgattggacat |
17846856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 17860113 - 17860016
Alignment:
| Q |
11 |
ccagatcaataccttgacaaagctatcaaatctggctcttttgattatgcaattgttaaattctacaataaccctaattgtcaatatgatcaaacaaa |
108 |
Q |
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| T |
17860113 |
ccagatcactaccttgacaaagctattaaaactggcttgtttgattatgtacttgttcaattctacaataacccttcatgtcaatataatcaagcaaa |
17860016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 17819719 - 17819620
Alignment:
| Q |
11 |
ccagatcaataccttgacaaagctatcaaatctggctcttttgattatgcaattgttaaattctacaataaccctaattgtcaatatgatcaaacaaact |
110 |
Q |
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| T |
17819719 |
ccagattactaccttgacaaagctatcaaaactggcttgtttgattatatacttgttcaattctaccataacactccatgtcaatatgatcaaataaact |
17819620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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