View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15344_low_4 (Length: 600)

Name: NF15344_low_4
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15344_low_4
NF15344_low_4
[»] chr5 (1 HSPs)
chr5 (136-600)||(7663940-7664404)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 136 - 600
Target Start/End: Original strand, 7663940 - 7664404
Alignment:
Q  136 caacatagatcagaaggattttgtactacaaataagaaaatgaatccctcaaaattttctcttctcaaaatcttctannnnnnncacttgttcttttttc 235  Q
    ||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||       |||||| |||||||||    
T  7663940 caacatagatcaggaggattttgtactacaaacaagaaaataaatccctcaaagttttctcttctcaaaatcttctattttttccacttgctcttttttc 7664039  T
Q  236 attcaaaagtcttccctccctttccttcaaactctcaaaacttaagagtttatgatggatcgaatgtattgttaaagatgagttacttcaataagcaatc 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7664040 attcaaaagtcttccctccctttccttcaaactctcaaaacttaagagtttatgatggatcgaatgtattgttaaagatgagttacttcaataagcaatc 7664139  T
Q  336 atccttataaaactttgttccgtcaatctactctaaccgtaaaactcgttaagaatacacttttttaatttaaaacttcttaaaaccatcattggaggtg 435  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7664140 atccttataaaactttgttccgtcaatctactctaacagtaaaactcgttaagaatacacttttttaatttaaaacttcttaaaaccgtcattggaggtg 7664239  T
Q  436 cttttatctatccgtttattgggacaattttttaaaattaaactgaactctaaactcgagatagatttcattgttggcaagaacaaagatacctctcata 535  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7664240 cttttatctatccgtttattgggacaattttttaaaattaaattgaactctaaactcgagatagatttcattgtcggcaagaacaaagatacctctcata 7664339  T
Q  536 agcggcaagaacaaacaagtacaactatccactgttggcactaacaaaggtacctaagagcatct 600  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7664340 aacggcaagaacaaacaagtacaactatccactgttggcgctaacaaaggtacctaagagcatct 7664404  T

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