View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_5 (Length: 589)
Name: NF15344_low_5
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 11 - 569
Target Start/End: Complemental strand, 1249446 - 1248890
Alignment:
| Q |
11 |
atacttaagaagatgagaacgtacttaaaacatgtagactatccatactaattataattagattgcatttctcttaactccatgcataaacaagagcaca |
110 |
Q |
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| T |
1249446 |
atacttaagaagatgagaacgtacttaaaacat--agactatccatactaattataattagattgcatttctcttaactccatgcataaacaagagcaca |
1249349 |
T |
|
| Q |
111 |
ataatacatgaagtccatttattaagcatgcatccctttagttaactaggccttgcaaggggccaagggagcaccacataaacacttattattctcaaac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249348 |
ataatacatgaagtccatttattaagcatgcatccctttagttaactaggtcttgcaaggggccaagggagcaccacataaacacttattattctcaaac |
1249249 |
T |
|
| Q |
211 |
cacgacggatcaaacccttgcaacttccctccatcctttggtataggaccacaaagctggttgtggcttacatctaggcctacaagcttaggaaggtggc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
1249248 |
cacgacggatcaaacccttgcaacttccctccatcctttggtataggaccacaaagctggttgtggctcacatctaggcctacaagcttaggaaggcggc |
1249149 |
T |
|
| Q |
311 |
cgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcggggataggaccggttag |
410 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1249148 |
cgaggtaagccggaacccgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcagggataggaccggttag |
1249049 |
T |
|
| Q |
411 |
gctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtc |
510 |
Q |
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| T |
1249048 |
gctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtc |
1248949 |
T |
|
| Q |
511 |
tccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcacc |
569 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1248948 |
tccaggtatggtaggtcagcaatgagtggggggatcgtaccgacgaggtcatcagcacc |
1248890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 298 - 571
Target Start/End: Original strand, 12079465 - 12079738
Alignment:
| Q |
298 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
397 |
Q |
| |
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||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
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| T |
12079465 |
ttaggaaggcggccgaggtaagctggaattggaccggttaattggttgttattaagccctaaggtggctaaattggttagtttgctaaagtaatcaggga |
12079564 |
T |
|
| Q |
398 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
497 |
Q |
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||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||| | |||||||||||||| |||||||| || |||||||| ||| ||| |
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| T |
12079565 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttaggtaggaggcg |
12079664 |
T |
|
| Q |
498 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccat |
571 |
Q |
| |
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|| ||||||||||| ||||| ||||| || || |||||||| ||||| |||||||| || ||||||||||||| |
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| T |
12079665 |
taaaatgagggtctcgaggtaaggtagatcggcgatgagtggcggtattgtaccgacaagatcatcagcaccat |
12079738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 298 - 571
Target Start/End: Original strand, 12096105 - 12096378
Alignment:
| Q |
298 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
397 |
Q |
| |
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||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
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| T |
12096105 |
ttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagtttgctaaagtaatcaggga |
12096204 |
T |
|
| Q |
398 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
497 |
Q |
| |
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||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||| | |||||||||||||| |||||||| || |||||||||||| ||| |
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| T |
12096205 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttagggaggaggcg |
12096304 |
T |
|
| Q |
498 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccat |
571 |
Q |
| |
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|| ||||||||||| ||||| ||||| || || |||||||| || || |||||||| || |||||||| |||| |
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| T |
12096305 |
aaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcgggattgtaccgacaagatcatcagcgccat |
12096378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 283
Target Start/End: Original strand, 12078961 - 12079078
Alignment:
| Q |
166 |
caaggggccaagggagcaccacataaacacttattattctcaaaccacgacggatcaaacccttgcaacttccctccatcctttggtataggaccacaaa |
265 |
Q |
| |
|
||||||| ||| |||| |||||| ||||||||||||| | |||| |||| |||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
12078961 |
caagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctccgactgtcggtataggaccacaaa |
12079060 |
T |
|
| Q |
266 |
gctggttgtggcttacat |
283 |
Q |
| |
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| ||||||| ||| |||| |
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| T |
12079061 |
gttggttgttgctcacat |
12079078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 12095613 - 12095718
Alignment:
| Q |
178 |
ggagcaccacataaacacttattattctcaaaccacgacggatcaaacccttgcaacttccctccatcctttggtataggaccacaaagctggttgtggc |
277 |
Q |
| |
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|||| |||||| || | |||||||| | |||| |||| ||||||||| ||||||||||||||||| | | ||||||||||| |||||||||||| || |
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| T |
12095613 |
ggagaaccacacaagcccttattatgcgaaaacgacgatggatcaaactcttgcaacttccctccaactgtcggtataggaccgaaaagctggttgtagc |
12095712 |
T |
|
| Q |
278 |
ttacat |
283 |
Q |
| |
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| |||| |
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| T |
12095713 |
tcacat |
12095718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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