View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15344_low_8 (Length: 542)
Name: NF15344_low_8
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15344_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 6315347 - 6314855
Alignment:
| Q |
20 |
ccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggttttttccatctactatatgcctcgtgttaa |
119 |
Q |
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| T |
6315347 |
ccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggtcttttccatctactatatgcctcgtgttaa |
6315248 |
T |
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| Q |
120 |
tctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatattccaaagct |
219 |
Q |
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| T |
6315247 |
tctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatattccaaagct |
6315148 |
T |
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| Q |
220 |
gcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaactctgcaca |
319 |
Q |
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| T |
6315147 |
gcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaattctgcaca |
6315048 |
T |
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| Q |
320 |
tgatgaaaatgtcccctgcatgcgtttgaatttgaggtcataggtcactattcccctaagctgttgtagtttcttgccattcaaagaagatatgccttag |
419 |
Q |
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| T |
6315047 |
tgatgaaaatgtcccctgcatgcgtttgaatttgaggtcataggttactattcccctaagctgttgtagtctcttgccattcaaagaagatatgccttag |
6314948 |
T |
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| Q |
420 |
gaggtgctgtgtgtaggaagggaaagagtgacttctgtccctttttgcaatccacttgtgtgcttttaattccctaacggtcacaggttctgc |
512 |
Q |
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| T |
6314947 |
gaggtgctgtgtgtaggaagggaaagagtgacttctggccctttttgcaatccacttgtgtgcttttaattccctaacagtcacaggttctgc |
6314855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 413
Target Start/End: Complemental strand, 6318236 - 6318086
Alignment:
| Q |
263 |
accattcataatcattgttgtgcagttgttgatgacagtaaaaataaa--ctctgcacatgatgaaaatgtcccctgcatgcgtttgaatttgaggtcat |
360 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||||| || ||| ||| ||||||||||| ||||||| |
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| T |
6318236 |
accattcataatccttgttgtgcagctgttgatgacagtaaaattaaattctctccacatgatgaaactg--acctacatacgtttgaatttaaggtcat |
6318139 |
T |
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| Q |
361 |
aggtcactattcccctaagctgttgtagtttcttgccattcaaagaagatatg |
413 |
Q |
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| T |
6318138 |
atttcactatactcccaaacttttatagcctcttggcattcaaacaagatatg |
6318086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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