View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15344_low_9 (Length: 522)

Name: NF15344_low_9
Description: NF15344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15344_low_9
NF15344_low_9
[»] chr1 (9 HSPs)
chr1 (20-249)||(23651557-23651774)
chr1 (20-249)||(23620212-23620429)
chr1 (20-249)||(23736991-23737208)
chr1 (20-249)||(23706528-23706746)
chr1 (318-375)||(23705983-23706040)
chr1 (318-367)||(23620902-23620951)
chr1 (318-367)||(23652247-23652296)
chr1 (282-315)||(23706056-23706089)
chr1 (318-367)||(23737681-23737730)
[»] chr4 (1 HSPs)
chr4 (69-212)||(48432323-48432463)
[»] chr3 (5 HSPs)
chr3 (164-221)||(1922919-1922976)
chr3 (69-151)||(54138867-54138947)
chr3 (69-141)||(53285099-53285169)
chr3 (69-117)||(52809133-52809181)
chr3 (44-74)||(52809069-52809099)
[»] chr6 (1 HSPs)
chr6 (69-141)||(11844591-11844661)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 23651557 - 23651774
Alignment:
Q  20 agaatttgggagatcatcctgtggtgctccatgcaaagtttcctgaagctgttcatccaatttcttgatatttggatcctatgacatattgacatttttt 119  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||||||  ||||    
T  23651557 agaatttgagagatcatcctgtggtgcttcatgcaaagtttcctgaagctgttcagccagtttcctgatatttggatcctatgacacattgaca--tttt 23651654  T
Q  120 aaatctccatgatgaaatactaatattatatatacaattagtacgtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaa 219  Q
    ||  | ||||||||||||||||||||||||||    ||||    |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23651655 aagacgccatgatgaaatactaatattatata---catta----gtaatttagagtgtacatccaataaatgacattccctagtgagtgaaaaatgaaaa 23651747  T
Q  220 gaggaagaagacttgggtcaaccatatgat 249  Q
    |||   ||||||||||||||||||||||||    
T  23651748 gag---gaagacttgggtcaaccatatgat 23651774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 23620212 - 23620429
Alignment:
Q  20 agaatttgggagatcatcctgtggtgctccatgcaaagtttcctgaagctgttcatccaatttcttgatatttggatcctatgacatattgacatttttt 119  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||      
T  23620212 agaatttgagagatcatcctgtggtgcttcatgcaaagtttcctgaagctgttcagccagtttcctgatatttggatcctatgacacattgacatttt-- 23620309  T
Q  120 aaatctccatgatgaaatactaatattatatatacaattagtacgtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaa 219  Q
    ||  | || |||||||||||||||||||||||    ||||    |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23620310 aagacgccgtgatgaaatactaatattatata---catta----gtaatttagagtgtacatccaataaatgacattccctagtgagtgaaaaatgaaaa 23620402  T
Q  220 gaggaagaagacttgggtcaaccatatgat 249  Q
    |||   ||||||||||||||||||||||||    
T  23620403 gag---gaagacttgggtcaaccatatgat 23620429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 23736991 - 23737208
Alignment:
Q  20 agaatttgggagatcatcctgtggtgctccatgcaaagtttcctgaagctgttcatccaatttcttgatatttggatcctatgacatattgacatttttt 119  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||      
T  23736991 agaatttgagagatcatcctgtggtgcttcatgcaaagtttcctgaagctgttcagccagtttcctgatatttggatcctatgacacattgacatttt-- 23737088  T
Q  120 aaatctccatgatgaaatactaatattatatatacaattagtacgtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaa 219  Q
    ||  | || |||||||||||||||||||||||    ||||    |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23737089 aagacgccgtgatgaaatactaatattatata---catta----gtaatttagagtgtacatccaataaatgacattccctagtgagtgaaaaatgaaaa 23737181  T
Q  220 gaggaagaagacttgggtcaaccatatgat 249  Q
    |||   ||||||||||||||||||||||||    
T  23737182 gag---gaagacttgggtcaaccatatgat 23737208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 23706746 - 23706528
Alignment:
Q  20 agaatttgggagatcatcctgtggtgctccatgcaaagtttcctgaagctgttcatccaatttcttgatatttggatcctatgacatattgacatttttt 119  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||      
T  23706746 agaatttgtgagatcatcctgtggtgcttcatgcaaagtttcctgaagctgttcagccagtttcctgatatttggatcctatgacacattgacatttt-- 23706649  T
Q  120 aaatctccatgatgaaatactaatattatatatacaattagtacgtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaa 219  Q
    ||  | || |||||||||||||||||||||||    ||||    |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23706648 aagacgccttgatgaaatactaatattatata---catta----gtaatttagagtgtacatccaataaatgacattccctagtgagtgaaaaatgaaaa 23706556  T
Q  220 gaggaagaagacttgggtc-aaccatatgat 249  Q
    |||   ||||||||||||| |||||||||||    
T  23706555 gag---gaagacttgggtcaaaccatatgat 23706528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 23706040 - 23705983
Alignment:
Q  318 gagcttacattgagcagaggtgagaaatcaaaatgtccagaagtagctgtggaggatg 375  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  23706040 gagcttacattgagcagagctgagaaatcaaaatgtccaggagtaactgtggaggatg 23705983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 23620902 - 23620951
Alignment:
Q  318 gagcttacattgagcagaggtgagaaatcaaaatgtccagaagtagctgt 367  Q
    ||||||||||||||||| | ||||||||||||| |||||| |||||||||    
T  23620902 gagcttacattgagcagggctgagaaatcaaaacgtccaggagtagctgt 23620951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 23652247 - 23652296
Alignment:
Q  318 gagcttacattgagcagaggtgagaaatcaaaatgtccagaagtagctgt 367  Q
    ||||||||||||||||| | ||||||||||||| |||||| |||||||||    
T  23652247 gagcttacattgagcagggctgagaaatcaaaaagtccaggagtagctgt 23652296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 23706089 - 23706056
Alignment:
Q  282 aaatacagcacacaccacacatatgcaaataaca 315  Q
    ||||||||||||||||||||||||||||||||||    
T  23706089 aaatacagcacacaccacacatatgcaaataaca 23706056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 23737681 - 23737730
Alignment:
Q  318 gagcttacattgagcagaggtgagaaatcaaaatgtccagaagtagctgt 367  Q
    ||||||||||||||||| | ||||||||||||| |||||| |||||||||    
T  23737681 gagcttacattgagcagggctgagaaatcaaaacgtccaggagtagctgt 23737730  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 48432323 - 48432463
Alignment:
Q  69 tgttcatccaatttcttgatatttggatcctatgacatattgacattt----tttaaatctccatgatgaaatactaatattatatatacaattagtacg 164  Q
    |||||| |||||||||| ||| |||||||||||| |||||||||||||    ||||| |||||||||||||||||| ||| ||||||    ||||    |    
T  48432323 tgttcagccaatttcttaatacttggatcctatggcatattgacattttatatttaagtctccatgatgaaatactgatactatata---catta----g 48432415  T
Q  165 taattcagagtgtacatccgacaaatgacattccctagtgagtgaaaa 212  Q
    ||||||| ||||| |||| ||||||| |||||||||||||||||||||    
T  48432416 taattcatagtgtgcatctgacaaataacattccctagtgagtgaaaa 48432463  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 1922976 - 1922919
Alignment:
Q  164 gtaattcagagtgtacatccgacaaatgacattccctagtgagtgaaaaatgaaaaga 221  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  1922976 gtaattcagagtttacatctgacaaatgacattccctagtgagtgaaaaatgaaaaga 1922919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 54138947 - 54138867
Alignment:
Q  69 tgttcatccaatttcttgatatttggatcctatgacatattgacattttttaaatctccatgatgaaatactaatattatata 151  Q
    |||||| ||||||||||||||||| ||||||| |||||||||| |  |||||| ||||||||||||||||||||||| |||||    
T  54138947 tgttcagccaatttcttgatatttagatcctacgacatattgaga--ttttaagtctccatgatgaaatactaatatcatata 54138867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 53285169 - 53285099
Alignment:
Q  69 tgttcatccaatttcttgatatttggatcctatgacatattgacattttttaaatctccatgatgaaatacta 141  Q
    |||||| |||||||||||||||||| ||||||||||||||||| |  |||||| |||||||||||||||||||    
T  53285169 tgttcagccaatttcttgatatttgtatcctatgacatattgaga--ttttaagtctccatgatgaaatacta 53285099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 52809133 - 52809181
Alignment:
Q  69 tgttcatccaatttcttgatatttggatcctatgacatattgacatttt 117  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  52809133 tgttcagccaattccttgatatttggatcctatgacatattgacatttt 52809181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 74
Target Start/End: Original strand, 52809069 - 52809099
Alignment:
Q  44 tgctccatgcaaagtttcctgaagctgttca 74  Q
    |||||||||||||||||||||||||||||||    
T  52809069 tgctccatgcaaagtttcctgaagctgttca 52809099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 11844591 - 11844661
Alignment:
Q  69 tgttcatccaatttcttgatatttggatcctatgacatattgacattttttaaatctccatgatgaaatacta 141  Q
    |||||| |||||||||||||||||| ||||||||||||||||| |  |||||| |||||||||||||||||||    
T  11844591 tgttcagccaatttcttgatatttgtatcctatgacatattgaga--ttttaagtctccatgatgaaatacta 11844661  T

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