View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15345_high_4 (Length: 300)

Name: NF15345_high_4
Description: NF15345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15345_high_4
NF15345_high_4
[»] chr6 (5 HSPs)
chr6 (41-300)||(779679-779938)
chr6 (48-92)||(7256191-7256235)
chr6 (48-102)||(3527169-3527223)
chr6 (49-92)||(1402617-1402660)
chr6 (46-102)||(10337680-10337736)
[»] chr7 (2 HSPs)
chr7 (52-156)||(20553734-20553838)
chr7 (46-106)||(35041750-35041810)
[»] chr1 (1 HSPs)
chr1 (50-150)||(6430685-6430785)
[»] chr8 (1 HSPs)
chr8 (48-161)||(2402693-2402806)
[»] chr4 (4 HSPs)
chr4 (83-220)||(24188145-24188281)
chr4 (71-240)||(30015157-30015325)
chr4 (46-102)||(14085414-14085470)
chr4 (46-102)||(51117644-51117700)
[»] chr5 (4 HSPs)
chr5 (171-204)||(1978562-1978595)
chr5 (213-261)||(32117755-32117803)
chr5 (193-270)||(37326254-37326333)
chr5 (119-207)||(39646502-39646589)
[»] chr3 (2 HSPs)
chr3 (173-222)||(3727271-3727320)
chr3 (48-128)||(44722920-44722998)
[»] chr2 (1 HSPs)
chr2 (51-95)||(10581888-10581932)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 41 - 300
Target Start/End: Complemental strand, 779938 - 779679
Alignment:
Q  41 cctagaacatggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatcatgagtaaaatctaactatgaatcgtaagataaattac 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  779938 cctagaacatggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatcatgagtaaaatctaactacgaatcgtaagataaattac 779839  T
Q  141 cgataaaagtatgacaatttttaaggagaaataagtgacatagcaaacttataagctaatatatcatataaaaacctcaataattcacgattcaagtcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  779838 cgataaaagtatgacaatttttaaggagaaataagtgacatagcaaacttataagctaatatatcatataaaaacctcaataattcacgattcaagtcat 779739  T
Q  241 gaatcaaacgacaatagaaaatttgctagcaccaataaaatagtgactaactacagttaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  779738 gaatcaaacgacaatagaaaatttgctagcaccaataaaatagtgactaactacagttaa 779679  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 7256191 - 7256235
Alignment:
Q  48 catggttatcaaatcgatattcaaatcacgaatcagaagacctat 92  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  7256191 catggttatcaaatcgagattcaaatcacgaatcagaagacctat 7256235  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 3527223 - 3527169
Alignment:
Q  48 catggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatc 102  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||    
T  3527223 catggttatcaaatcgacattcaaatcatgaatccgaagatctattttctgaatc 3527169  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 1402660 - 1402617
Alignment:
Q  49 atggttatcaaatcgatattcaaatcacgaatcagaagacctat 92  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||    
T  1402660 atggttaacaaatcgagattcaaatcacgaatcaaaagacctat 1402617  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 10337680 - 10337736
Alignment:
Q  46 aacatggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatc 102  Q
    |||||| ||||| |||||||||||| ||   ||||||||||||||||||| ||||||    
T  10337680 aacatgtttatcgaatcgatattcagattgtgaatcagaagacctattttttgaatc 10337736  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 20553734 - 20553838
Alignment:
Q  52 gttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatcatgagtaaaatctaactatgaatcgtaagataaattaccgataaaagta 151  Q
    ||||||||||||| |||||||||| |||  ||||||||||||||||||||  ||| || ||||    || ||||||||||||| ||||||||||||| ||    
T  20553734 gttatcaaatcgaaattcaaatcatgaactagaagacctattttctgaattgtgaatagaatcctcttacgaatcgtaagatacattaccgataaaaata 20553833  T
Q  152 tgaca 156  Q
    |||||    
T  20553834 tgaca 20553838  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 35041810 - 35041750
Alignment:
Q  46 aacatggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatcatga 106  Q
    ||||||||||||||||||| |||||||||| ||||| |||||| | | ||| |||||||||    
T  35041810 aacatggttatcaaatcgagattcaaatcatgaatccgaagacatttgttccgaatcatga 35041750  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 6430785 - 6430685
Alignment:
Q  50 tggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatcatgagtaaaatctaactatgaatcgtaagataaattaccgataaaag 149  Q
    ||||||||||||||| ||||||||   |||||| |||||||||||||  ||| |||| | |||||| | |||||||| ||||||| |||| | |||||||    
T  6430785 tggttatcaaatcgagattcaaattgtgaatcaaaagacctattttccaaatgatgaatcaaatcttattatgaatcataagatacattagcaataaaag 6430686  T
Q  150 t 150  Q
    |    
T  6430685 t 6430685  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 2402806 - 2402693
Alignment:
Q  48 catggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatcatgagtaaaatctaactatgaatcgtaagataaattaccgataaa 147  Q
    |||| ||||||||||||  |||| |||  ||||| |||||||||||||   ||||| || | |||||| |||||||||||||||||| |||||  ||||     
T  2402806 catgcttatcaaatcgaatttcatatcgtgaatcggaagacctatttttgaaatcacgaatcaaatcttactatgaatcgtaagatacattactaataag 2402707  T
Q  148 agtatgacaatttt 161  Q
    | ||||||| ||||    
T  2402706 aatatgacattttt 2402693  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 24188281 - 24188145
Alignment:
Q  83 gaagacctattttctgaatcatgagtaaaatctaactatgaatcgtaagataaattaccgataaaagtatgacaatttttaaggagaaataagtgacata 182  Q
    ||||| |||||||||||| | |||||  ||||| | |||||| ||||||||| |||||| |||||| ||| || |||||| |  | ||| |||||||| |    
T  24188281 gaagagctattttctgaaccgtgagtcgaatcttattatgaaccgtaagatacattaccaataaaattataac-atttttgaataaaaacaagtgacaca 24188183  T
Q  183 gcaaacttataagctaatatatcatataaaaacctcaa 220  Q
     |||| ||||||| | ||||||||||||| || |||||    
T  24188182 acaaaattataagttgatatatcatataagaaactcaa 24188145  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 30015157 - 30015325
Alignment:
Q  71 aatcacgaatcagaagacctattttctgaatcatgagtaaaatctaactatgaatcgtaagataaattaccgataaaagtatgacaatttttaaggagaa 170  Q
    ||||| |||||||||||| |  ||||  ||||| ||||  ||| | ||||| ||| ||| |||| |||||  ||| || ||||||| |||||||| | ||    
T  30015157 aatcatgaatcagaagacgtgctttcccaatcaagagtcgaattttactataaatagtatgatacattacaaatataaatatgaca-tttttaagtaaaa 30015255  T
Q  171 ataagtgacatagcaaacttataagctaatatatcatataaaaacctcaataattcacgattcaagtcat 240  Q
    | ||||||||| | ||| || |||||||||||||||  ||  ||  ||||||||||| ||||||||||||    
T  30015256 acaagtgacatgggaaagttttaagctaatatatcaactactaatatcaataattcaagattcaagtcat 30015325  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 14085470 - 14085414
Alignment:
Q  46 aacatggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatc 102  Q
    ||||||| ||||||||||||||||||||    || ||||||||| ||||||||||||    
T  14085470 aacatggatatcaaatcgatattcaaattgtaaaccagaagaccaattttctgaatc 14085414  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 51117644 - 51117700
Alignment:
Q  46 aacatggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatc 102  Q
    ||||||||||||||||| | |||||||||  |||||| |||||||| |||| |||||    
T  51117644 aacatggttatcaaatcaagattcaaatcgtgaatcaaaagacctactttccgaatc 51117700  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 1978562 - 1978595
Alignment:
Q  171 ataagtgacatagcaaacttataagctaatatat 204  Q
    ||||||||||||||||| ||||||||||||||||    
T  1978562 ataagtgacatagcaaaattataagctaatatat 1978595  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 32117803 - 32117755
Alignment:
Q  213 aacctcaataattcacgattcaagtcatgaatcaaacgacaatagaaaa 261  Q
    ||||||||| ||||| |||||||||||| ||||||| ||||| ||||||    
T  32117803 aacctcaatgattcaagattcaagtcataaatcaaatgacaaaagaaaa 32117755  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 37326333 - 37326254
Alignment:
Q  193 aagctaatatatcatataaaaacctc--aataattcacgattcaagtcatgaatcaaacgacaatagaaaatttgctagc 270  Q
    ||||||||||||||||||  ||| ||  ||| ||||| ||||||| |||| ||||||| ||||| |||||||| ||||||    
T  37326333 aagctaatatatcatatacgaacatcaaaatgattcaagattcaaatcataaatcaaatgacaaaagaaaattggctagc 37326254  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 39646589 - 39646502
Alignment:
Q  119 tatgaatcgtaagataaattaccgataaaagtatgacaatttttaaggagaaataagtgacatagcaaacttataagctaatatatcat 207  Q
    |||||||||||||||  |||||| |||||| |||| || |||||||| | ||| |||  ||||||||||| ||||| ||||| ||||||    
T  39646589 tatgaatcgtaagatccattaccaataaaattatggca-tttttaagtaaaaacaagcaacatagcaaacctataaactaatgtatcat 39646502  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 3727320 - 3727271
Alignment:
Q  173 aagtgacatagcaaacttataagctaatatatcatataaaaacctcaata 222  Q
    |||||||||||| || ||||||||| ||||||||||||  ||||||||||    
T  3727320 aagtgacatagctaaattataagctgatatatcatatacgaacctcaata 3727271  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 44722998 - 44722920
Alignment:
Q  48 catggttatcaaatcgatattcaaatcacgaatcagaagacctattttctgaatcatgagtaaaatctaactatgaatcgt 128  Q
    ||||||||||||||||| |||||||||   |||||||  ||| ||||| |||||||||| | |||||| | ||||||||||    
T  44722998 catggttatcaaatcgagattcaaatcttaaatcaga--acccattttatgaatcatgaatcaaatcttattatgaatcgt 44722920  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 10581888 - 10581932
Alignment:
Q  51 ggttatcaaatcgatattcaaatcacgaatcagaagacctatttt 95  Q
    |||||||||||| |||||||||| | |||| ||||||||||||||    
T  10581888 ggttatcaaatcaatattcaaattatgaatgagaagacctatttt 10581932  T

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