View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15345_high_5 (Length: 258)
Name: NF15345_high_5
Description: NF15345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15345_high_5 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 31723056 - 31723313
Alignment:
| Q |
1 |
aacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggaccataaaagaaatttgaataggcgtctcatagcatggaagag |
100 |
Q |
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| T |
31723056 |
aacaatttaatttacttgtccctctcttaattccaacaggtatgaagttgggatgggaccataaaagaaatttgaataggcgtctcatagcatggaagag |
31723155 |
T |
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| Q |
101 |
cgatgatgatccaacccccggagacttttcttggggtgttgtattgaatccgtatcctgatatctatatgatgaagggagnnnnnnngtactacagactt |
200 |
Q |
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| T |
31723156 |
cgatgatgatccaacccccggagacttttcttggggtgttgtattgaatccgtatcctgatatctatatgatgaagggagaaaaaaagtactacagactt |
31723255 |
T |
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| Q |
201 |
ggaccatggaacggcttgcgttttagtggtaggccagagatgaagcctaattctattt |
258 |
Q |
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| T |
31723256 |
ggaccatggaacggcttgcgttttagtggtaggccagagatgaagcctaattctattt |
31723313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 31715811 - 31716061
Alignment:
| Q |
1 |
aacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggaccataaaagaaatttgaataggcgtctcatagcatggaagag |
100 |
Q |
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| T |
31715811 |
aacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggaccataaaagaaatttgaataggcgtctcatagcatggaagag |
31715910 |
T |
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| Q |
101 |
cgatgatgatccaacccccggagacttttcttggggtgttgtattgaatccgtatcctgatatctatatgatgaagggagnnnnnnngtactacagactt |
200 |
Q |
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| T |
31715911 |
cgatgatgatccaacccccggagacttttcttggggtgttgtattgaatccgtatcctgatatctatatgatgaagggagaaaaaaagtactacagactt |
31716010 |
T |
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| Q |
201 |
ggaccatggaacggcttgcgttttagtggtaggccagagatgaagcctaat |
251 |
Q |
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| T |
31716011 |
ggaccatggaatggcttgcgttttagcggtaggccagacttgaagcctaat |
31716061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 31721685 - 31721935
Alignment:
| Q |
1 |
aacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggaccataaaagaaatttgaataggcgtctcatagcatggaagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721685 |
aacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggaccataaaagaaatttgaataggcgtctcatagcatggaagag |
31721784 |
T |
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| Q |
101 |
cgatgatgatccaacccccggagacttttcttggggtgttgtattgaatccgtatcctgatatctatatgatgaagggagnnnnnnngtactacagactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31721785 |
cgatgatgatccaacccccggagacttttcttggggtgttgtattgaatccgtatcctgatatctatatgatgaagggagaaaaaaagtactacagactt |
31721884 |
T |
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| Q |
201 |
ggaccatggaacggcttgcgttttagtggtaggccagagatgaagcctaat |
251 |
Q |
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| T |
31721885 |
ggaccatggaatggcttgcgttttagcggtaggccagacttgaagcctaat |
31721935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 31700503 - 31700753
Alignment:
| Q |
1 |
aacaatttaatttacttgtccctttcttaattccaacaggtatgaagttgggatgggaccataaaagaaatttgaataggcgtctcatagcatggaagag |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||||||| |
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| T |
31700503 |
aacaatttaatttacttgtccccttcttaattccaacaggtatgaaattgggatgggaccgcaaaaaaaaattgaataggcgtctcacagcatggaagag |
31700602 |
T |
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| Q |
101 |
cgatgatgatccaacccccggagacttttcttggggtgttgtattgaatccgtatcctgatatctatatgatgaagggagnnnnnnngtactacagactt |
200 |
Q |
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|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| || |
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| T |
31700603 |
tgacgatgatccaaccccgggggacttttcttggggtgttgtattgaatccgtatcctgaaatctatatgatgaaggaagaacaaaagtactacagattt |
31700702 |
T |
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| Q |
201 |
ggaccatggaacggcttgcgttttagtggtaggccagagatgaagcctaat |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31700703 |
ggaccatggaacggcttgcgttttagtggtaggccagatatgaagcctaat |
31700753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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