View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15345_low_1 (Length: 816)

Name: NF15345_low_1
Description: NF15345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15345_low_1
NF15345_low_1
[»] chr1 (3 HSPs)
chr1 (19-678)||(12723286-12723937)
chr1 (228-298)||(27242472-27242542)
chr1 (265-298)||(19516408-19516441)
[»] chr3 (7 HSPs)
chr3 (325-583)||(53029716-53029972)
chr3 (228-298)||(44052526-44052596)
chr3 (228-298)||(44352266-44352336)
chr3 (228-298)||(54536725-54536795)
chr3 (228-294)||(20553148-20553214)
chr3 (327-399)||(20647106-20647179)
chr3 (228-297)||(53029610-53029679)
[»] chr7 (3 HSPs)
chr7 (228-298)||(9356443-9356513)
chr7 (265-296)||(21367684-21367715)
chr7 (234-298)||(28537571-28537636)
[»] chr8 (4 HSPs)
chr8 (228-298)||(9599904-9599974)
chr8 (228-298)||(28395370-28395440)
chr8 (234-288)||(10964934-10964989)
chr8 (331-397)||(24214169-24214236)
[»] chr2 (5 HSPs)
chr2 (228-298)||(1285230-1285300)
chr2 (245-298)||(1194924-1194977)
chr2 (353-403)||(30848683-30848733)
chr2 (265-298)||(35030520-35030553)
chr2 (265-298)||(36148368-36148401)
[»] chr4 (3 HSPs)
chr4 (245-298)||(17625056-17625109)
chr4 (265-298)||(12269177-12269210)
chr4 (234-298)||(29216325-29216390)
[»] chr6 (1 HSPs)
chr6 (228-298)||(15599553-15599622)


Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 678
Target Start/End: Original strand, 12723286 - 12723937
Alignment:
Q  19 aaaagtcacacactgtttatgtcttttaaattacaccctgtgaaattagaaagaatnnnnnnnnnngatgctatgcattaaggcatcttgcatgtgcatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  12723286 aaaagtcacacactgtttatgtcttttaaattacaccctgtgaaattagaaagaataaaaaaaa--gatgctatgcattaaggcatcttgcatgtgcatg 12723383  T
Q  119 cgacacaaaggataccaactttttcaacattaatctttttacgagtcattcttgtattagggtttcccaatcgcaattataatggtgacactatggnnnn 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  12723384 cgacacaaaggataccaactttttcaacattaatctttttacgagtcattcttgtattagggtttcccaatcgcaattataatggtgacactatggtttt 12723483  T
Q  219 nnnatgtatagtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcatatata--attcatgtnnnnnn 316  Q
       ||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||  ||||||||          
T  12723484 tttatgtataatgacggatcttgtccaaaatattgaggggaatgataaatattaactaaatattataattaaaattcatatatataattcatgtaaaaaa 12723583  T
Q  317 nncgtcatcacaacaactccaacacaatactaaagtttcaaattactgtctaccaactagatagtatatcctagccttagagaatcataaccagccttag 416  Q
      |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12723584 --cgtcatcacagcaactccaacacaatactaaagtttcaaattactatctaccaactagatagtatatcctagccttagagaatcataaccagccgtag 12723681  T
Q  417 tgagaagagagttataggatggggtgtcgtgtgagactaggttgatagagagaaaatatctaaatatatcagaggtattttggtaatttcctctatnnnn 516  Q
    |||||||||||| |||  ||||||||||||||||||||     || |||||||||||||||||||||||||||||||||||||| |||| ||||||        
T  12723682 tgagaagagagtaatat-atggggtgtcgtgtgagact-----gacagagagaaaatatctaaatatatcagaggtattttggtcattttctctataaaa 12723775  T
Q  517 nnnttatttatctttttagtggggtggagccgtggctaccatgggttcccaccaagaaccgccactgtttatgtctacattattatatcacgcaattgaa 616  Q
       |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||    
T  12723776 aaattatttatctttatagtggggtggagccgtggctaccatgggttcccaccaaaaactgccactgtttatgtctgcattattatatcacgcaattgaa 12723875  T
Q  617 atttgaacattgagaacccacaagaaagtaaatcatagatttaaagattgagaactcacaag 678  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12723876 atttgaacattgagagcccacaagaaagtaaatcatagatttaaagattgagaactcacaag 12723937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 27242472 - 27242542
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    |||| |||||||||   ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||    
T  27242472 agtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcata 27242542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 19516441 - 19516408
Alignment:
Q  265 aaatattaactaaatattataattaaaattcata 298  Q
    |||||||||||||||||||||||| |||||||||    
T  19516441 aaatattaactaaatattataattgaaattcata 19516408  T

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Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 325 - 583
Target Start/End: Original strand, 53029716 - 53029972
Alignment:
Q  325 cacaacaactccaacacaatactaaagtttcaaattactgtctaccaactagatagtatatcctagccttagagaatcataaccagccttagtgagaaga 424  Q
    |||||||||||||| | || ||||||  ||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||||| ||| | ||||||||    
T  53029716 cacaacaactccaatataagactaaaacttcaaattattatctaccaactagatagtctatcctagccttagagaatcaaaaccaacctaattgagaaga 53029815  T
Q  425 gagttataggat-ggggtgtcgtgtgaga-ctaggttgatagagagaaaatatctaaatatatcagaggtattttggtaatttcctctatnnnnnnntta 522  Q
    || |  | || | |||||||  ||||||| | ||| ||  |||||||||||||| |||||||| || ||||||||||| |||||||||||       |||    
T  53029816 gactactggggtgggggtgttatgtgagaccgagggtgccagagagaaaatatccaaatatattaggggtattttggtcatttcctctat--ataaatta 53029913  T
Q  523 tttatctttttagtggggtggagccgtggctaccatgggttcccaccaagaaccgccactg 583  Q
    ||||| |||||||| |||||||||| |||| |||||| | |||||||||||||||||||||    
T  53029914 tttat-tttttagt-gggtggagccatggccaccatgagctcccaccaagaaccgccactg 53029972  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 44052526 - 44052596
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    |||| |||||||||   ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||    
T  44052526 agtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcata 44052596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 44352336 - 44352266
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    |||| |||||||||   ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||    
T  44352336 agtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcata 44352266  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 54536725 - 54536795
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    |||| |||||||||   ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||    
T  54536725 agtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcata 54536795  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 20553148 - 20553214
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaatt 294  Q
    |||| |||||||||   ||||||||| ||||| |||||||||| ||||||||||||||||| |||||    
T  20553148 agtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaatt 20553214  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 399
Target Start/End: Original strand, 20647106 - 20647179
Alignment:
Q  327 caacaactccaacacaatactaaagtttcaaat-tactgtctaccaactagatagtatatcctagccttagaga 399  Q
    ||||||||||| ||||| ||||||| | ||||| ||||||||||||| |||||||  |||| ||| ||||||||    
T  20647106 caacaactccaccacaaaactaaagctccaaatatactgtctaccaattagatagcttatcatagtcttagaga 20647179  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 53029610 - 53029679
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcat 297  Q
    |||| ||| ||||| ||||||||||| ||| | |||| ||||||||||| |||||| |||| ||||||||    
T  53029610 agtggcgggtcttgctcaaaatattgggggaagcggttaatattaactatatattacaattgaaattcat 53029679  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 9356443 - 9356513
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    |||| ||||||||||  ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  9356443 agtggcggatcttgtcgaaaatattggggggagcggtaaatatgaactaaatattataattaaaattcata 9356513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 296
Target Start/End: Original strand, 21367684 - 21367715
Alignment:
Q  265 aaatattaactaaatattataattaaaattca 296  Q
    ||||||||||||||||||||||||||||||||    
T  21367684 aaatattaactaaatattataattaaaattca 21367715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 28537636 - 28537571
Alignment:
Q  234 ggatcttgttcaaaatattgaggggaacggtaaatattaact-aaatattataattaaaattcata 298  Q
    ||||||||  |||||||||| ||||| ||  ||||||||||| ||||||||||||| |||||||||    
T  28537636 ggatcttgcccaaaatattggggggagcgtcaaatattaactaaaatattataattgaaattcata 28537571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 9599904 - 9599974
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    |||| |||||||||   ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||    
T  9599904 agtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcata 9599974  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 28395370 - 28395440
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    |||| |||||||||   ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||    
T  28395370 agtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcata 28395440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 10964934 - 10964989
Alignment:
Q  234 ggatcttgttcaaaatattgaggggaacggtaaatattaact-aaatattataatt 288  Q
    |||||||||||||||||||||| | | ||||||||||||||| |||||||||||||    
T  10964934 ggatcttgttcaaaatattgagagtagcggtaaatattaactaaaatattataatt 10964989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 397
Target Start/End: Complemental strand, 24214236 - 24214169
Alignment:
Q  331 aactccaacacaatactaaagtttcaaat-tactgtctaccaactagatagtatatcctagccttaga 397  Q
    ||||||||||||| | ||||| | ||||| |||| ||||||||||||||||  |||||||||||||||    
T  24214236 aactccaacacaaaattaaagctccaaatatactatctaccaactagatagcctatcctagccttaga 24214169  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 1285230 - 1285300
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    |||| |||||||||   ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||    
T  1285230 agtggcggatcttgccgaaaatattggggggagcggtaaatatgaactaaatattataattgaaattcata 1285300  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 1194924 - 1194977
Alignment:
Q  245 aaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||    
T  1194924 aaaatattggggggagcggtaaatatgaactaaatattataattgaaattcata 1194977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 30848683 - 30848733
Alignment:
Q  353 ttcaaattactgtctaccaactagatagtatatcctagccttagagaatca 403  Q
    ||||||||||| ||||||||||||||||| |||| || |||||||||||||    
T  30848683 ttcaaattactatctaccaactagatagtctatcttaaccttagagaatca 30848733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 35030520 - 35030553
Alignment:
Q  265 aaatattaactaaatattataattaaaattcata 298  Q
    |||| |||||||||||||||||||||||||||||    
T  35030520 aaatgttaactaaatattataattaaaattcata 35030553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 36148368 - 36148401
Alignment:
Q  265 aaatattaactaaatattataattaaaattcata 298  Q
    |||||||||||||||||||||||| |||||||||    
T  36148368 aaatattaactaaatattataattgaaattcata 36148401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 17625056 - 17625109
Alignment:
Q  245 aaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||    
T  17625056 aaaatattggggggaagggtaaatatgaactaaatattataattgaaattcata 17625109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 12269177 - 12269210
Alignment:
Q  265 aaatattaactaaatattataattaaaattcata 298  Q
    |||||||||||||||||||||||| |||||||||    
T  12269177 aaatattaactaaatattataatttaaattcata 12269210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 29216390 - 29216325
Alignment:
Q  234 ggatcttgttcaaaatattgaggggaacggtaaatattaact-aaatattataattaaaattcata 298  Q
    ||||||||| |||||||||| | ||  |||||| | |||||| |||||||||||||||||||||||    
T  29216390 ggatcttgtccaaaatattgggaggggcggtaagttttaactgaaatattataattaaaattcata 29216325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 15599622 - 15599553
Alignment:
Q  228 agtgacggatcttgttcaaaatattgaggggaacggtaaatattaactaaatattataattaaaattcata 298  Q
    |||| |||||||||   ||||||||| ||||  |||||||||| ||||||||||||||||| |||||||||    
T  15599622 agtggcggatcttgccgaaaatattg-ggggtgcggtaaatatgaactaaatattataattgaaattcata 15599553  T

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