View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15345_low_3 (Length: 403)
Name: NF15345_low_3
Description: NF15345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15345_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 82 - 387
Target Start/End: Original strand, 5242523 - 5242827
Alignment:
| Q |
82 |
attttctctacgaactttaatcaaatcatgcatcaaacacaaagtaaaaagtgcaattgcattgtgagagaaccgcaaccatgaaaattcactaagctct |
181 |
Q |
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| T |
5242523 |
attttctctac-aactttaatcaaatcatgcatcaaaaacaaagtaaaaagtgcaattgcattgtgagagaaccgcaaccatgaaaattcactaagctct |
5242621 |
T |
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| Q |
182 |
agacctcgtacgtgtcattgacatagttccaaaaacatgcgtgtcttgtttctaaattagccgcgtctgtaatccacgtgtcagttcataaccactctta |
281 |
Q |
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| T |
5242622 |
agacctcgtacgtgtcattgatatagttccaaaaacatgcgtgtcttgtttctaaattagccgcgtctgtaatccacgtgtcagttcataaccactctta |
5242721 |
T |
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| Q |
282 |
ctgttccttttttaccttgttgtcatcttctcaaatatttaccactctaaaaatattatcatgtcatgcaacattatttatttaatttatttgtcacatt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5242722 |
ctgttccttttttaccttgttgtcatcttctcaaatatttaccactctaaaaatattatcatgtcatgcaacattatttatttaatttatttgtcacatt |
5242821 |
T |
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| Q |
382 |
ttgata |
387 |
Q |
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|||||| |
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| T |
5242822 |
ttgata |
5242827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 5242494 - 5242527
Alignment:
| Q |
17 |
taaattacaacagctgaaacatgttaaatatttt |
50 |
Q |
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| T |
5242494 |
taaattacaacagctgaaacatgttaaatatttt |
5242527 |
T |
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